5U9F
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 16S ribosomal RNA | polymer | 1539 | 498725.4 | 1 | GenBank (944404559) | Escherichia coli | |
| 2 | B (01) | 23S ribosomal RNA | polymer | 2903 | 941322.2 | 1 | GenBank (42756) | Escherichia coli | |
| 3 | C (02) | 5S ribosomal RNA | polymer | 119 | 38483.9 | 1 | GenBank (1072784372) | Escherichia coli | |
| 4 | D (Y) | Alternative ribosome-rescue factor A | polymer | 72 | 8190.4 | 1 | UniProt (P36675) Pfam (PF03889) | Escherichia coli | |
| 5 | E, MA (X, W) | fMet-tRNA (P- and E-site) | polymer | 77 | 24802.8 | 2 | GenBank (1114191980) | Escherichia coli | |
| 6 | F (03) | 50S ribosomal protein L1 | polymer | 234 | 24765.7 | 1 | UniProt (D7XWJ2) UniProt (by SIFTS) (P0A7L0) Pfam (PF00687) | Escherichia coli | |
| 7 | G (04) | 50S ribosomal protein L2 | polymer | 273 | 29923.6 | 1 | UniProt (D7Z9F8) UniProt (by SIFTS) (P60422) Pfam (PF00181) Pfam (PF03947) | Escherichia coli | |
| 8 | H (05) | 50S ribosomal protein L3 | polymer | 209 | 22277.5 | 1 | UniProt (D7Z9F5) UniProt (by SIFTS) (P60438) Pfam (PF00297) | Escherichia coli | |
| 9 | I (06) | 50S ribosomal protein L4 | polymer | 201 | 22121.6 | 1 | UniProt (D7Z9F6) UniProt (by SIFTS) (P60723) Pfam (PF00573) | Escherichia coli | |
| 10 | J (07) | 50S ribosomal protein L5 | polymer | 179 | 20333.6 | 1 | UniProt (D7Z9G7) UniProt (by SIFTS) (P62399) Pfam (PF00281) Pfam (PF00673) | Escherichia coli | |
| 11 | K (08) | 50S ribosomal protein L6 | polymer | 177 | 18932.8 | 1 | UniProt (D7Z9H0) UniProt (by SIFTS) (P0AG55) Pfam (PF00347) | Escherichia coli | |
| 12 | L (09) | 50S ribosomal protein L9 | polymer | 149 | 15789.0 | 1 | UniProt (D7ZI15) UniProt (by SIFTS) (P0A7R1) Pfam (PF01281) Pfam (PF03948) | Escherichia coli | |
| 13 | M (10) | 50S ribosomal protein L10 | polymer | 165 | 17736.6 | 1 | UniProt (D7ZA73) UniProt (by SIFTS) (P0A7J3) Pfam (PF00466) | Escherichia coli | |
| 14 | N (11) | 50S ribosomal protein L11 | polymer | 142 | 14894.4 | 1 | UniProt (D7ZA71) UniProt (by SIFTS) (P0A7J7) Pfam (PF03946) Pfam (PF00298) | Escherichia coli | |
| 15 | O (12) | 50S ribosomal protein L13 | polymer | 142 | 16050.6 | 1 | UniProt (D7ZET0) UniProt (by SIFTS) (P0AA10) Pfam (PF00572) | Escherichia coli | |
| 16 | P (13) | 50S ribosomal protein L14 | polymer | 123 | 13565.1 | 1 | UniProt (D7Z9G5) UniProt (by SIFTS) (P0ADY3) Pfam (PF00238) | Escherichia coli | |
| 17 | Q (14) | 50S ribosomal protein L15 | polymer | 144 | 15008.5 | 1 | UniProt (D8BU19) UniProt (by SIFTS) (P02413) Pfam (PF00828) | Escherichia coli | |
| 18 | R (15) | 50S ribosomal protein L16 | polymer | 136 | 15312.3 | 1 | UniProt (D7Z9G2) UniProt (by SIFTS) (P0ADY7) Pfam (PF00252) | Escherichia coli | |
| 19 | S (16) | 50S ribosomal protein L17 | polymer | 127 | 14423.7 | 1 | UniProt (B7N179) UniProt (by SIFTS) (P0AG44) Pfam (PF01196) | Escherichia coli | |
| 20 | T (17) | 50S ribosomal protein L18 | polymer | 117 | 12794.7 | 1 | UniProt (D7Z9H1) UniProt (by SIFTS) (P0C018) Pfam (PF00861) | Escherichia coli | |
| 21 | U (18) | 50S ribosomal protein L19 | polymer | 115 | 13159.3 | 1 | UniProt (D7ZKU3) UniProt (by SIFTS) (P0A7K6) Pfam (PF01245) | Escherichia coli | |
| 22 | V (19) | 50S ribosomal protein L20 | polymer | 118 | 13528.0 | 1 | UniProt (B7MAS6) UniProt (by SIFTS) (P0A7L3) Pfam (PF00453) | Escherichia coli | |
| 23 | W (20) | 50S ribosomal protein L21 | polymer | 103 | 11586.4 | 1 | UniProt (D7ZEN7) UniProt (by SIFTS) (P0AG48) Pfam (PF00829) | Escherichia coli | |
| 24 | X (21) | 50S ribosomal protein L22 | polymer | 110 | 12253.4 | 1 | UniProt (D7Z9G0) UniProt (by SIFTS) (P61175) Pfam (PF00237) | Escherichia coli | |
| 25 | Y (22) | 50S ribosomal protein L23 | polymer | 100 | 11222.2 | 1 | UniProt (D7X2Z9) UniProt (by SIFTS) (P0ADZ0) Pfam (PF00276) | Escherichia coli | |
| 26 | Z (23) | 50S ribosomal protein L24 | polymer | 104 | 11339.3 | 1 | UniProt (D7Z9G6) UniProt (by SIFTS) (P60624) Pfam (PF00467) Pfam (PF17136) | Escherichia coli | |
| 27 | AA (24) | 50S ribosomal protein L25 | polymer | 94 | 10713.5 | 1 | UniProt (D7XH79) UniProt (by SIFTS) (P68919) Pfam (PF01386) | Escherichia coli | |
| 28 | BA (25) | 50S ribosomal protein L27 | polymer | 85 | 9146.5 | 1 | UniProt (D7ZEN6) UniProt (by SIFTS) (P0A7L8) Pfam (PF01016) | Escherichia coli | |
| 29 | CA (26) | 50S ribosomal protein L28 | polymer | 78 | 9027.6 | 1 | UniProt (S0YB49) UniProt (by SIFTS) (P0A7M2) Pfam (PF00830) | Escherichia coli | |
| 30 | DA (27) | 50S ribosomal protein L29 | polymer | 63 | 7286.5 | 1 | UniProt (D7Z9G3) UniProt (by SIFTS) (P0A7M6) Pfam (PF00831) | Escherichia coli | |
| 31 | EA (28) | 50S ribosomal protein L30 | polymer | 59 | 6554.8 | 1 | UniProt (D7Z9H3) UniProt (by SIFTS) (P0AG51) Pfam (PF00327) | Escherichia coli | |
| 32 | FA (29) | 50S ribosomal protein L31 | polymer | 70 | 7887.1 | 1 | UniProt (D7ZFP6) UniProt (by SIFTS) (P0A7M9) Pfam (PF01197) | Escherichia coli | |
| 33 | GA (30) | 50S ribosomal protein L32 | polymer | 57 | 6463.4 | 1 | UniProt (D7ZGG2) UniProt (by SIFTS) (P0A7N4) Pfam (PF01783) | Escherichia coli | |
| 34 | HA (31) | 50S ribosomal protein L33 | polymer | 55 | 6388.6 | 1 | UniProt (D7Z9P0) UniProt (by SIFTS) (P0A7N9) Pfam (PF00471) | Escherichia coli | |
| 35 | IA (32) | 50S ribosomal protein L34 | polymer | 46 | 5397.5 | 1 | UniProt (B7MGC4) UniProt (by SIFTS) (P0A7P5) Pfam (PF00468) | Escherichia coli | |
| 36 | JA (33) | 50S ribosomal protein L35 | polymer | 65 | 7313.0 | 1 | UniProt (D7Z814) UniProt (by SIFTS) (P0A7Q1) Pfam (PF01632) | Escherichia coli | |
| 37 | KA (34) | 50S ribosomal protein L36 | polymer | 38 | 4377.4 | 1 | UniProt (A0A0E2L017) UniProt (by SIFTS) (P0A7Q6) Pfam (PF00444) | Escherichia coli | |
| 38 | LA (V) | truncated mRNA | polymer | 14 | 4597.8 | 1 | Escherichia coli | ||
| 39 | NA (Z) | Peptide chain release factor RF2 | polymer | 365 | 41300.7 | 1 | UniProt (P07012) Pfam (PF03462) Pfam (PF00472) | Escherichia coli | RF-2 |
| 40 | OA (B) | 30S ribosomal protein S2 | polymer | 241 | 26781.7 | 1 | UniProt (D7ZK99) UniProt (by SIFTS) (P0A7V0) Pfam (PF00318) | Escherichia coli | |
| 41 | PA (C) | 30S ribosomal protein S3 | polymer | 233 | 26031.3 | 1 | UniProt (B7MCS9) UniProt (by SIFTS) (P0A7V3) Pfam (PF07650) Pfam (PF00189) | Escherichia coli | |
| 42 | QA (D) | 30S ribosomal protein S4 | polymer | 206 | 23514.2 | 1 | UniProt (D7Z9H7) Pfam (PF01479) UniProt (by SIFTS) (P0A7V8) Pfam (PF00163) | Escherichia coli | |
| 43 | RA (E) | 30S ribosomal protein S5 | polymer | 167 | 17629.4 | 1 | UniProt (D7Z9H2) Pfam (PF00333) Pfam (PF03719) UniProt (by SIFTS) (P0A7W1) | Escherichia coli | |
| 44 | SA (F) | 30S ribosomal protein S6 | polymer | 131 | 15211.1 | 1 | UniProt (D7ZI17) Pfam (PF01250) UniProt (by SIFTS) (P02358) | Escherichia coli | |
| 45 | TA (G) | 30S ribosomal protein S7 | polymer | 156 | 17637.4 | 1 | UniProt (D7ZAN1) Pfam (PF00177) UniProt (by SIFTS) (P02359) | Escherichia coli | |
| 46 | UA (H) | 30S ribosomal protein S8 | polymer | 130 | 14146.6 | 1 | UniProt (D7Z9G9) Pfam (PF00410) UniProt (by SIFTS) (P0A7W7) | Escherichia coli | |
| 47 | VA (I) | 30S ribosomal protein S9 | polymer | 130 | 14886.3 | 1 | UniProt (D7ZES9) Pfam (PF00380) UniProt (by SIFTS) (P0A7X3) | Escherichia coli | |
| 48 | WA (J) | 30S ribosomal protein S10 | polymer | 103 | 11755.6 | 1 | UniProt (D7Z9F4) Pfam (PF00338) UniProt (by SIFTS) (P0A7R5) | Escherichia coli | |
| 49 | XA (K) | 30S ribosomal protein S11 | polymer | 129 | 13871.0 | 1 | UniProt (B7MCR3) Pfam (PF00411) UniProt (by SIFTS) (P0A7R9) | Escherichia coli | |
| 50 | YA (L) | 30S ribosomal protein S12 | polymer | 124 | 13768.2 | 1 | UniProt (D7ZAN0) Pfam (PF00164) UniProt (by SIFTS) (P0A7S3) | Escherichia coli | |
| 51 | ZA (M) | 30S ribosomal protein S13 | polymer | 118 | 13128.5 | 1 | UniProt (H4UQ02) Pfam (PF00416) UniProt (by SIFTS) (P0A7S9) | Escherichia coli | |
| 52 | AB (N) | 30S ribosomal protein S14 | polymer | 101 | 11606.6 | 1 | UniProt (D7Z9G8) Pfam (PF00253) UniProt (by SIFTS) (P0AG59) | Escherichia coli | |
| 53 | BB (O) | 30S ribosomal protein S15 | polymer | 89 | 10290.8 | 1 | UniProt (D7ZEL4) Pfam (PF00312) UniProt (by SIFTS) (P0ADZ4) | Escherichia coli | |
| 54 | CB (P) | 30S ribosomal protein S16 | polymer | 82 | 9207.6 | 1 | UniProt (B7MIU7) Pfam (PF00886) UniProt (by SIFTS) (P0A7T3) | Escherichia coli | |
| 55 | DB (Q) | 30S ribosomal protein S17 | polymer | 84 | 9724.5 | 1 | UniProt (D7Z9G4) Pfam (PF00366) UniProt (by SIFTS) (P0AG63) | Escherichia coli | |
| 56 | EB (R) | 30S ribosomal protein S18 | polymer | 75 | 9005.5 | 1 | UniProt (A0A0E2KXL3) Pfam (PF01084) UniProt (by SIFTS) (P0A7T7) | Escherichia coli | |
| 57 | FB (S) | 30S ribosomal protein S19 | polymer | 92 | 10455.4 | 1 | UniProt (D7Z9F9) Pfam (PF00203) UniProt (by SIFTS) (P0A7U3) | Escherichia coli | |
| 58 | GB (T) | 30S ribosomal protein S20 | polymer | 87 | 9708.5 | 1 | UniProt (D7ZAS2) Pfam (PF01649) UniProt (by SIFTS) (P0A7U7) | Escherichia coli | |
| 59 | HB (U) | 30S ribosomal protein S21 | polymer | 71 | 8524.0 | 1 | UniProt (A0A0E2L2J1) Pfam (PF01165) UniProt (by SIFTS) (P68679) | Escherichia coli | |
| 60 | AC, AD, AE, AF, AG... (A, 01, V, W, I...) | MAGNESIUM ION | non-polymer | 24.3 | 360 | Chemie (MG) | |||
| 61 | ZO (34) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) |
Sequence modifications
01: 1 - 2903 (GenBank: 42756)
| PDB | External Database | Details |
|---|---|---|
| G 1847 | A 5346 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 60 |
| Total formula weight | 2296683.8 | |
| Non-Polymers* | Number of molecules | 361 |
| Total formula weight | 8815.2 | |
| All* | Total formula weight | 2305499.0 |
