5U2R
PRECATALYTIC TERNARY COMPLEX OF HUMAN DNA POLYMERASE BETA WITH GAPPED DNA SUBSTARTE, INCOMING L-DCTP AND CA2+
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | DNA polymerase beta | polymer | 343 | 39258.8 | 1 | UniProt (P06746) Pfam (PF14716) Pfam (PF10391) Pfam (PF14792) Pfam (PF14791) In PDB | Homo sapiens (Human) | |
2 | T | 16- MER TEMPLATE | polymer | 16 | 4869.2 | 1 | synthetic construct | ||
3 | P | 10- MER PRIMER | polymer | 10 | 3061.0 | 1 | synthetic construct | ||
4 | D | 5-MER PHOSPHORYLATED DOWNSTREAM PRIMER | polymer | 5 | 1536.0 | 1 | synthetic construct | ||
5 | A | 4-amino-1-{2-deoxy-5-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-L-erythro-pentofuranosyl}pyrimidin-2(1H)-one | non-polymer | 467.2 | 1 | Chemie (1S0) | |||
6 | A | CALCIUM ION | non-polymer | 40.1 | 2 | Chemie (CA) | |||
7 | A | SODIUM ION | non-polymer | 23.0 | 2 | Chemie (NA) | |||
8 | A | ACETATE ION | non-polymer | 59.0 | 3 | Chemie (ACT) | |||
9 | water | water | 18.0 | 286 | Chemie (HOH) |
Sequence modifications
A: 1 - 335 (UniProt: P06746)
PDB | External Database | Details |
---|---|---|
Met -1 | - | initiating methionine |
Gly 0 | - | expression tag |
His 336 | - | expression tag |
His 337 | - | expression tag |
His 338 | - | expression tag |
His 339 | - | expression tag |
His 340 | - | expression tag |
His 341 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 48725.0 | |
Non-Polymers* | Number of molecules | 8 |
Total formula weight | 770.4 | |
All* | Total formula weight | 49495.4 |