5TZG
Structure of the BldD CTD(D116A)-(c-di-GMP)2, form 2
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (C, A) | DNA-binding protein | polymer | 91 | 10113.4 | 2 | UniProt (F2RCL8) Pfam (PF21179) | Streptomyces venezuelae | |
| 2 | C, D (C) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 3 | E, F (C) | 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one) | non-polymer | 690.4 | 2 | Chemie (C2E) PubChem (135440063) PubChem (135566344) PubChem (136437725) PubChem (136465801) PubChem (136503951) PubChem (146177770) PubChem (173716374) PubChem (174009991) PubChem (135566464) PubChem (135625254) PubChem (135867623) PubChem (135975628) PubChem (136177399) PubChem (136443483) PubChem (137221491) PubChem (137295286) PubChem (148921766) PubChem (148921769) PubChem (164708340) PubChem (168270823) | |||
| 4 | G, H (C, A) | water | water | 18.0 | 29 | Chemie (HOH) |
Sequence modifications
C, A: 80 - 166 (UniProt: F2RCL8)
| PDB | External Database | Details |
|---|---|---|
| Gly 76 | - | expression tag |
| Ser 77 | - | expression tag |
| His 78 | - | expression tag |
| Met 79 | - | expression tag |
| Ala 116 | Asp 116 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 20226.8 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 1511.6 | |
| All* | Total formula weight | 21738.4 |
