5T5H
Structure and assembly model for the Trypanosoma cruzi 60S ribosomal subunit
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | RNA LARGE SUBUNIT ALPHA | polymer | 1278 | 414400.0 | 1 | Trypanosoma cruzi | ||
| 2 | B (B) | RNA LARGE SUBUNIT BETA | polymer | 941 | 303899.8 | 1 | Trypanosoma cruzi | Trypanosoma cruzi 5.8S ribosomal RNA, internal transcribed spacers 1-7 (ITS1-ITS7), and 28S ribosomal RNA,Trypanosoma cruzi 5.8S ribosomal RNA, internal transcribed spacers 1-7 (ITS1-ITS7), and 28S ribosomal RNA,Trypanosoma cruzi 5.8S ribosomal RNA, internal transcribed spacers 1-7 (ITS1-ITS7), and 28S ribosomal RNA,Trypanosoma cruzi 5.8S ribosomal RNA, internal transcribed spacers 1-7 (ITS1-ITS7), and 28S ribosomal RNA | |
| 3 | C (C) | 5.8S rRNA | polymer | 169 | 54425.4 | 1 | Trypanosoma cruzi | ||
| 4 | D (D) | 5S rRNA | polymer | 118 | 38047.6 | 1 | Trypanosoma cruzi | ||
| 5 | E (E) | srRNA1 | polymer | 146 | 46982.8 | 1 | Trypanosoma cruzi | ||
| 6 | F (F) | srRNA3 | polymer | 46 | 14572.7 | 1 | Trypanosoma cruzi | ||
| 7 | G (G) | srRNA2 | polymer | 123 | 39608.4 | 1 | Trypanosoma cruzi | ||
| 8 | H (H) | srRNA4 | polymer | 91 | 29374.5 | 1 | Trypanosoma cruzi | ||
| 9 | I (I) | 60S ribosomal protein L18 | polymer | 192 | 21595.5 | 1 | UniProt (Q4DZP2) Pfam (PF17135) | Trypanosoma cruzi | |
| 10 | J (L) | 60S ribosomal protein L11 | polymer | 65 | 7672.1 | 1 | UniProt (Q4CNF4) Pfam (PF00673) | Trypanosoma cruzi | |
| 11 | K (N) | 60S ribosomal protein L13 | polymer | 205 | 23690.8 | 1 | UniProt (Q4E661) Pfam (PF01294) | Trypanosoma cruzi | |
| 12 | L (O) | 60S ribosomal protein L13a | polymer | 203 | 23412.8 | 1 | UniProt (V5DCT1) Pfam (PF00572) | Trypanosoma cruzi | |
| 13 | M (P) | 40S ribosomal protein L14 | polymer | 149 | 17483.6 | 1 | UniProt (Q4DQ35) Pfam (PF00467) Pfam (PF01929) | Trypanosoma cruzi | |
| 14 | N (Q) | Ribosomal protein L15 | polymer | 203 | 24154.5 | 1 | UniProt (Q4CTG9) Pfam (PF00827) | Trypanosoma cruzi | |
| 15 | O (R) | 60S ribosomal protein L17 | polymer | 152 | 17545.6 | 1 | UniProt (Q4DC23) Pfam (PF00237) | Trypanosoma cruzi | |
| 16 | P (S) | 60S ribosomal protein L18a | polymer | 177 | 20595.0 | 1 | UniProt (Q4DZ31) Pfam (PF01775) | Trypanosoma cruzi | |
| 17 | Q (T) | Ribosomal protein L19-like protein | polymer | 150 | 18187.6 | 1 | UniProt (Q9BMP1) Pfam (PF01280) | Trypanosoma cruzi | |
| 18 | R (U) | Ribosomal protein L21E (60S) | polymer | 146 | 16584.5 | 1 | UniProt (Q4DED2) Pfam (PF01157) | Trypanosoma cruzi | |
| 19 | S (V) | 60S ribosomal protein L22 | polymer | 99 | 11873.0 | 1 | UniProt (Q4DZN3) Pfam (PF01776) | Trypanosoma cruzi | |
| 20 | T (W) | 60S ribosomal protein L23 | polymer | 127 | 13651.0 | 1 | UniProt (Q4E4R0) Pfam (PF00238) | Trypanosoma cruzi | |
| 21 | U (X) | 60S ribosomal protein L23a | polymer | 116 | 13444.7 | 1 | UniProt (Q4E2Y1) Pfam (PF00276) | Trypanosoma cruzi | |
| 22 | V (Y) | Ribosomal protein L24 | polymer | 61 | 7363.7 | 1 | UniProt (Q4E078) Pfam (PF01246) | Trypanosoma cruzi | |
| 23 | W (Z) | 60S ribosomal protein L26 | polymer | 113 | 13107.4 | 1 | UniProt (Q4DG45) Pfam (PF16906) Pfam (PF00467) | Trypanosoma cruzi | |
| 24 | X (a) | Ribosomal protein L27 | polymer | 132 | 15419.3 | 1 | UniProt (Q9U4H7) Pfam (PF00467) Pfam (PF01777) | Trypanosoma cruzi | |
| 25 | Y (b) | 60S ribosomal protein L27A/L29 | polymer | 144 | 16103.8 | 1 | UniProt (Q4E4Q8) Pfam (PF00828) | Trypanosoma cruzi | |
| 26 | Z (c) | 60S ribosomal protein L28 | polymer | 125 | 13836.2 | 1 | UniProt (O00822) Pfam (PF01778) | Trypanosoma cruzi | |
| 27 | AA (d) | Ribosomal protein L29 | polymer | 63 | 7378.6 | 1 | UniProt (Q4CPD8) Pfam (PF01779) | Trypanosoma cruzi | |
| 28 | BA (e) | 60S ribosomal protein L2 | polymer | 245 | 26737.2 | 1 | UniProt (Q4DPQ8) Pfam (PF00181) Pfam (PF03947) | Trypanosoma cruzi | |
| 29 | CA (f) | Ribosomal protein L13 | polymer | 397 | 45360.0 | 1 | UniProt (V5B599) Pfam (PF00297) | Trypanosoma cruzi | |
| 30 | DA (g) | 60S ribosomal protein L30 | polymer | 66 | 7509.0 | 1 | UniProt (Q4DIC9) Pfam (PF01248) | Trypanosoma cruzi | |
| 31 | EA (h) | 60S ribosomal subunit protein L31 | polymer | 169 | 19483.1 | 1 | UniProt (V5C333) Pfam (PF01198) | Trypanosoma cruzi | |
| 32 | FA (i) | 60S ribosomal protein L32 | polymer | 113 | 13218.5 | 1 | UniProt (Q4D1H8) Pfam (PF01655) | Trypanosoma cruzi | |
| 33 | GA (j) | 60S ribosomal protein L34 | polymer | 104 | 12302.4 | 1 | UniProt (Q4DB26) Pfam (PF01199) | Trypanosoma cruzi | |
| 34 | HA (k) | 60S ribosomal protein L35 | polymer | 120 | 14526.5 | 1 | UniProt (Q4E2E0) Pfam (PF00831) | Trypanosoma cruzi | |
| 35 | IA (l) | Ribosomal protein L35A | polymer | 136 | 15513.2 | 1 | UniProt (Q4E581) Pfam (PF01247) | Trypanosoma cruzi | |
| 36 | JA (m) | Ribosomal protein L36 | polymer | 95 | 10820.0 | 1 | UniProt (V5BDJ2) Pfam (PF01158) | Trypanosoma cruzi | |
| 37 | KA (n) | Ribosomal protein L37 | polymer | 81 | 9734.4 | 1 | UniProt (Q4DXW6) Pfam (PF01907) | Trypanosoma cruzi | |
| 38 | LA (o) | 60S ribosomal protein L37a | polymer | 85 | 9609.3 | 1 | UniProt (Q4DAV9) Pfam (PF01780) | Trypanosoma cruzi | Ribosomal proteins L37,putative |
| 39 | MA (p) | Ribosomal protein L38 | polymer | 58 | 6840.2 | 1 | UniProt (Q4DQ60) Pfam (PF01781) | Trypanosoma cruzi | |
| 40 | NA (q) | Ribosomal protein L39 | polymer | 50 | 6436.8 | 1 | UniProt (Q4DVC6) Pfam (PF00832) | Trypanosoma cruzi | |
| 41 | OA (r) | 60S ribosomal protein L4 | polymer | 337 | 37228.4 | 1 | UniProt (Q4CQW2) Pfam (PF00573) Pfam (PF14374) | Trypanosoma cruzi | |
| 42 | PA (t) | 60S ribosomal protein L44 | polymer | 93 | 10908.1 | 1 | UniProt (Q4CV79) Pfam (PF00935) | Trypanosoma cruzi | |
| 43 | QA (u) | 60S ribosomal protein L5 | polymer | 254 | 28665.9 | 1 | UniProt (Q4CU61) Pfam (PF17144) | Trypanosoma cruzi | |
| 44 | RA (v) | 60S ribosomal protein L6 | polymer | 171 | 19042.5 | 1 | UniProt (Q4DIV9) Pfam (PF01159) | Trypanosoma cruzi | |
| 45 | SA (w) | 60S ribosomal protein L7 | polymer | 215 | 24898.4 | 1 | UniProt (Q4DNZ7) Pfam (PF08079) Pfam (PF00327) | Trypanosoma cruzi | |
| 46 | TA (x) | Ribosomal protein L7a-like protein | polymer | 223 | 25701.3 | 1 | UniProt (Q9BMP0) Pfam (PF01248) | Trypanosoma cruzi | |
| 47 | AB, AC, AD, AE, BB... (A, B, C, D, E...) | MAGNESIUM ION | non-polymer | 24.3 | 105 | Chemie (MG) | |||
| 48 | UE, VE, XE (n, o, t) | ZINC ION | non-polymer | 65.4 | 3 | Chemie (ZN) | |||
| 49 | AF, BF, CF, DF, EF... (C, E, G, H, I...) | water | water | 18.0 | 83 | Chemie (HOH) |
Sequence modifications
B: 6 - 136 (PDB: 5T5H)
B: 446 - 1658 (PDB: 5T5H)
E: 2 - 64 (PDB: 5T5H)
E: 65 - 209 (PDB: 5T5H)
G: 21 - 127 (PDB: 5T5H)
G: 128 - 178 (PDB: 5T5H)
H: 2 - 47 (PDB: 5T5H)
H: 62 - 133 (PDB: 5T5H)
L: 17 - 109 (PDB: 5T5H)
L: 130 - 172 (UniProt: Q4CNF4)
P: 5 - 153 (UniProt: Q4DQ35)
g: 14 - 97 (UniProt: Q4DIC9)
n: 2 - 82 (UniProt: Q4DXW6)
B: 446 - 1658 (PDB: 5T5H)
E: 2 - 64 (PDB: 5T5H)
E: 65 - 209 (PDB: 5T5H)
G: 21 - 127 (PDB: 5T5H)
G: 128 - 178 (PDB: 5T5H)
H: 2 - 47 (PDB: 5T5H)
H: 62 - 133 (PDB: 5T5H)
L: 17 - 109 (PDB: 5T5H)
L: 130 - 172 (UniProt: Q4CNF4)
P: 5 - 153 (UniProt: Q4DQ35)
| PDB | External Database | Details |
|---|---|---|
| Lys 72 | Arg 180 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Val 91 | Ala 73 | conflict |
| Leu 92 | Gly 74 | conflict |
| Ser 93 | Asn 75 | conflict |
| Ile 94 | Asn 76 | conflict |
| Thr 95 | Leu 77 | conflict |
| Val 97 | Leu 79 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Met 64 | Cys 64 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 46 |
| Total formula weight | 1588945.8 | |
| Non-Polymers* | Number of molecules | 108 |
| Total formula weight | 2748.3 | |
| All* | Total formula weight | 1591694.1 |
