5RAM
PanDDA analysis group deposition -- Crystal Structure of JMJD1B in complex with XS038544d
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B | Lysine-specific demethylase 3B | polymer | 372 | 43075.5 | 2 | UniProt (Q7LBC6) Pfam (PF02373) In PDB | Homo sapiens (Human) | JmjC domain-containing histone demethylation protein 2B,Jumonji domain-containing protein 1B,Nuclear protein 5qNCA |
2 | A, B | pyridine-4-carboxylic acid | non-polymer | 123.1 | 2 | Chemie (S3V) | |||
3 | A, B | CHLORIDE ION | non-polymer | 35.5 | 5 | Chemie (CL) | |||
4 | A, B | MANGANESE (II) ION | non-polymer | 54.9 | 2 | Chemie (MN) | |||
5 | water | water | 18.0 | 702 | Chemie (HOH) |
Sequence modifications
A, B: 1380 - 1728 (UniProt: Q7LBC6)
PDB | External Database | Details |
---|---|---|
Met 1357 | - | initiating methionine |
His 1358 | - | expression tag |
His 1359 | - | expression tag |
His 1360 | - | expression tag |
His 1361 | - | expression tag |
His 1362 | - | expression tag |
His 1363 | - | expression tag |
Ser 1364 | - | expression tag |
Ser 1365 | - | expression tag |
Gly 1366 | - | expression tag |
Val 1367 | - | expression tag |
Asp 1368 | - | expression tag |
Leu 1369 | - | expression tag |
Gly 1370 | - | expression tag |
Thr 1371 | - | expression tag |
Glu 1372 | - | expression tag |
Asn 1373 | - | expression tag |
Leu 1374 | - | expression tag |
Tyr 1375 | - | expression tag |
Phe 1376 | - | expression tag |
Gln 1377 | - | expression tag |
Ser 1378 | - | expression tag |
Met 1379 | - | expression tag |
Glu 1601 | Gln 1601 | conflict |
His 1606 | Gly 1606 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 86151.0 | |
Non-Polymers* | Number of molecules | 9 |
Total formula weight | 533.4 | |
All* | Total formula weight | 86684.4 |