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5PJU

PanDDA analysis group deposition -- Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 79)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Lysine-specific demethylase 4Dpolymer36442050.51UniProt (Q6B0I6)
Pfam (PF02375)
Pfam (PF02373)
Homo sapiens (Human)JmjC domain-containing histone demethylation protein 3D,Jumonji domain-containing protein 2D
2B
(A)
ZINC IONnon-polymer65.41Chemie (ZN)
3C
(A)
NICKEL (II) IONnon-polymer58.71Chemie (NI)
4D
(A)
MAGNESIUM IONnon-polymer24.31Chemie (MG)
5E
(A)
N-OXALYLGLYCINEnon-polymer147.11Chemie (OGA)
6F, G, H, I, J...
(A)
1,2-ETHANEDIOLnon-polymer62.18Chemie (EDO)
7N, O, P
(A)
SULFATE IONnon-polymer96.13Chemie (SO4)
8Q
(A)
waterwater18.0441Chemie (HOH)
Sequence modifications
A: 1 - 342 (UniProt: Q6B0I6)
PDBExternal DatabaseDetails
Met -21-expression tag
His -20-expression tag
His -19-expression tag
His -18-expression tag
His -17-expression tag
His -16-expression tag
His -15-expression tag
Ser -14-expression tag
Ser -13-expression tag
Gly -12-expression tag
Val -11-expression tag
Asp -10-expression tag
Leu -9-expression tag
Gly -8-expression tag
Thr -7-expression tag
Glu -6-expression tag
Asn -5-expression tag
Leu -4-expression tag
Tyr -3-expression tag
Phe -2-expression tag
Gln -1-expression tag
Ser 0-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight42050.5
Non-Polymers*Number of molecules15
Total formula weight1080.2
All*Total formula weight43130.8
*Water molecules are not included.

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PDB entries from 2024-10-30

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