5PHI

PanDDA analysis group deposition -- Crystal Structure of JMJD2D in complex with N09480a

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A (A)	Lysine-specific demethylase 4D	polymer	364	42050.5	1	UniProt (Q6B0I6) Pfam (PF02375) Pfam (PF02373)	Homo sapiens (Human)	JmjC domain-containing histone demethylation protein 3D,Jumonji domain-containing protein 2D
2	B (A)	ZINC ION	non-polymer		65.4	1	Chemie (ZN)
3	C (A)	NICKEL (II) ION	non-polymer		58.7	1	Chemie (NI)
4	D (A)	N-OXALYLGLYCINE	non-polymer		147.1	1	Chemie (OGA)
5	E, F, G, H, I... (A)	1,2-ETHANEDIOL	non-polymer		62.1	7	Chemie (EDO)
6	L, M, N, O, P (A)	SULFATE ION	non-polymer		96.1	5	Chemie (SO4)
7	Q (A)	2-methyl-1~{H}-benzimidazole	non-polymer		132.2	1	Chemie (8P7)
8	R (A)	water	water		18.0	306	Chemie (HOH)

Sequence modifications

A: 1 - 342 (UniProt: Q6B0I6)

PDB	External Database	Details
Met -21	-	expression tag
His -20	-	expression tag
His -19	-	expression tag
His -18	-	expression tag
His -17	-	expression tag
His -16	-	expression tag
His -15	-	expression tag
Ser -14	-	expression tag
Ser -13	-	expression tag
Gly -12	-	expression tag
Val -11	-	expression tag
Asp -10	-	expression tag
Leu -9	-	expression tag
Gly -8	-	expression tag
Thr -7	-	expression tag
Glu -6	-	expression tag
Asn -5	-	expression tag
Leu -4	-	expression tag
Tyr -3	-	expression tag
Phe -2	-	expression tag
Gln -1	-	expression tag
Ser 0	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	1
	Total formula weight	42050.5
Non-Polymers*	Number of molecules	16
	Total formula weight	1318.1
All*	Total formula weight	43368.7

*Water molecules are not included.