5OT7
Elongation factor G-ribosome complex captures in the absence of inhibitors.
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (1) | 16S Ribosomal RNA | polymer | 1507 | 489331.7 | 1 | GenBank (55771382) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 2 | B (2) | tRNA-Phe | polymer | 76 | 24485.5 | 1 | GenBank (1319589919) | Escherichia coli | |
| 3 | C (3) | mRNA | polymer | 15 | 4889.9 | 1 | Escherichia coli | ||
| 4 | D (4) | 23S Ribosomal RNA | polymer | 2901 | 943515.8 | 1 | GenBank (55771382) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 5 | E (5) | 5S Ribosomal RNA | polymer | 119 | 38553.0 | 1 | GenBank (55771382) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 6 | F (6) | 50S ribosomal protein L25 | polymer | 178 | 20107.2 | 1 | UniProt (Q5SHZ1) Pfam (PF01386) Pfam (PF14693) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | TL5 |
| 7 | G (7) | 50S ribosomal protein L9 | polymer | 146 | 16164.9 | 1 | UniProt (Q5SLQ1) Pfam (PF01281) Pfam (PF03948) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 8 | H (A) | 30S ribosomal protein S2 | polymer | 235 | 27116.4 | 1 | UniProt (P80371) Pfam (PF00318) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 9 | I (B) | 30S ribosomal protein S3 | polymer | 207 | 22975.6 | 1 | UniProt (P80372) Pfam (PF07650) Pfam (PF00189) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 10 | J (C) | 30S ribosomal protein S4 | polymer | 208 | 24242.3 | 1 | UniProt (P80373) Pfam (PF00163) Pfam (PF01479) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 11 | K (D) | 30S ribosomal protein S5 | polymer | 151 | 16460.2 | 1 | UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 12 | L (E) | 30S ribosomal protein S6 | polymer | 101 | 11988.8 | 1 | UniProt (Q5SLP8) Pfam (PF01250) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | TS9 |
| 13 | M (F) | 30S ribosomal protein S7 | polymer | 155 | 17919.8 | 1 | UniProt (P17291) Pfam (PF00177) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 14 | N (G) | 30S ribosomal protein S8 | polymer | 138 | 15868.6 | 1 | UniProt (P0DOY9) Pfam (PF00410) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 15 | O (H) | 30S ribosomal protein S9 | polymer | 127 | 14279.4 | 1 | UniProt (P80374) Pfam (PF00380) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 16 | P (I) | 30S ribosomal protein S10 | polymer | 99 | 11398.3 | 1 | UniProt (Q5SHN7) Pfam (PF00338) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 17 | Q (J) | 30S ribosomal protein S11 | polymer | 119 | 12606.4 | 1 | UniProt (P80376) Pfam (PF00411) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 18 | R (K) | 30S ribosomal protein S12 | polymer | 125 | 13875.4 | 1 | UniProt (Q5SHN3) Pfam (PF00164) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 19 | S (L) | 30S ribosomal protein S13 | polymer | 119 | 13494.7 | 1 | UniProt (P80377) Pfam (PF00416) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 20 | T (M) | 30S ribosomal protein S14 type Z | polymer | 60 | 7027.5 | 1 | UniProt (P0DOY6) Pfam (PF00253) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 21 | U (N) | 30S ribosomal protein S15 | polymer | 88 | 10447.2 | 1 | UniProt (Q5SJ76) Pfam (PF00312) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 22 | V (O) | 30S ribosomal protein S16 | polymer | 84 | 9995.5 | 1 | UniProt (Q5SJH3) Pfam (PF00886) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 23 | W (P) | 30S ribosomal protein S17 | polymer | 100 | 11880.1 | 1 | UniProt (P0DOY7) Pfam (PF00366) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 24 | X (Q) | 30S ribosomal protein S18 | polymer | 70 | 8155.8 | 1 | UniProt (Q5SLQ0) Pfam (PF01084) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 25 | Y (R) | 30S ribosomal protein S19 | polymer | 88 | 9961.6 | 1 | UniProt (Q5SHP2) Pfam (PF00203) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 26 | Z (S) | 30S ribosomal protein S20 | polymer | 99 | 10921.1 | 1 | UniProt (P80380) Pfam (PF01649) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 27 | AA (T) | 30S ribosomal protein Thx | polymer | 25 | 3089.7 | 1 | UniProt (Q5SIH3) Pfam (PF17070) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | S31 |
| 28 | BA (U) | Elongation factor G | polymer | 687 | 76547.6 | 1 | UniProt (Q5SHN5) Pfam (PF00009) Pfam (PF03144) Pfam (PF14492) Pfam (PF03764) Pfam (PF00679) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | EF-G |
| 29 | CA (V) | 50S ribosomal protein L27 | polymer | 78 | 8760.1 | 1 | UniProt (P60493) Pfam (PF01016) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 30 | DA (W) | 50S ribosomal protein L28 | polymer | 94 | 10559.6 | 1 | UniProt (P60494) Pfam (PF00830) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 31 | EA (X) | 50S ribosomal protein L29 | polymer | 71 | 8539.1 | 1 | UniProt (Q5SHP6) Pfam (PF00831) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 32 | FA (Y) | 50S ribosomal protein L30 | polymer | 60 | 6799.1 | 1 | UniProt (Q5SHQ6) Pfam (PF00327) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 33 | GA (Z) | 50S ribosomal protein L31 | polymer | 71 | 8300.5 | 1 | UniProt (Q5SJE1) Pfam (PF01197) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 34 | HA (a) | 50S ribosomal protein L32 | polymer | 59 | 6590.9 | 1 | UniProt (P80339) Pfam (PF01783) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 35 | IA (b) | 50S ribosomal protein L33 | polymer | 50 | 6214.4 | 1 | UniProt (P35871) Pfam (PF00471) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 36 | JA (c) | 50S ribosomal protein L34 | polymer | 48 | 5975.3 | 1 | UniProt (P80340) Pfam (PF00468) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 37 | KA (d) | 50S ribosomal protein L35 | polymer | 64 | 7375.0 | 1 | UniProt (Q5SKU1) Pfam (PF01632) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 38 | LA (e) | 50S ribosomal protein L36 | polymer | 37 | 4435.4 | 1 | UniProt (Q5SHR2) Pfam (PF00444) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | Ribosomal protein B |
| 39 | MA (f) | 50S ribosomal protein L1 | polymer | 227 | 24644.4 | 1 | UniProt (Q5SLP7) Pfam (PF00687) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 40 | NA (g) | 50S ribosomal protein L2 | polymer | 275 | 30401.4 | 1 | UniProt (P60405) Pfam (PF00181) Pfam (PF03947) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 41 | OA (h) | 50S ribosomal protein L3 | polymer | 205 | 22321.0 | 1 | UniProt (Q5SHN8) Pfam (PF00297) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 42 | PA (i) | 50S ribosomal protein L4 | polymer | 208 | 23071.7 | 1 | UniProt (Q5SHN9) Pfam (PF00573) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | L1e |
| 43 | QA (j) | 50S ribosomal protein L5 | polymer | 179 | 20720.1 | 1 | UniProt (Q5SHQ0) Pfam (PF00281) Pfam (PF00673) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 44 | RA (k) | 50S ribosomal protein L6 | polymer | 176 | 19182.4 | 1 | UniProt (P0DOY8) Pfam (PF00347) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 45 | SA (l) | Ribosomal protein uL10 | polymer | 130 | 11109.7 | 1 | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | ||
| 46 | TA (m) | Ribosomal protein uL11 | polymer | 140 | 11932.7 | 1 | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | ||
| 47 | UA (n) | Ribosomal protein bL12 | polymer | 71 | 6060.5 | 1 | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | ||
| 48 | VA (o) | 50S ribosomal protein L13 | polymer | 139 | 15828.8 | 1 | UniProt (P60488) Pfam (PF00572) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 49 | WA (p) | 50S ribosomal protein L14 | polymer | 122 | 13323.6 | 1 | UniProt (Q5SHP8) Pfam (PF00238) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 50 | XA (q) | 50S ribosomal protein L15 | polymer | 150 | 16319.1 | 1 | UniProt (Q5SHQ7) Pfam (PF00828) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 51 | YA (r) | 50S ribosomal protein L16 | polymer | 141 | 15993.9 | 1 | UniProt (P60489) Pfam (PF00252) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 52 | ZA (s) | 50S ribosomal protein L17 | polymer | 118 | 13750.1 | 1 | UniProt (Q9Z9H5) Pfam (PF01196) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 53 | AB (t) | 50S ribosomal protein L18 | polymer | 99 | 10998.9 | 1 | UniProt (Q5SHQ4) Pfam (PF00861) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | TL24 |
| 54 | BB (u) | 50S ribosomal protein L19 | polymer | 138 | 16289.9 | 1 | UniProt (P60490) Pfam (PF01245) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 55 | CB (v) | 50S ribosomal protein L20 | polymer | 117 | 13648.1 | 1 | UniProt (P60491) Pfam (PF00453) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 56 | DB (w) | 50S ribosomal protein L21 | polymer | 101 | 11069.2 | 1 | UniProt (P60492) Pfam (PF00829) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 57 | EB (x) | 50S ribosomal protein L22 | polymer | 113 | 12808.1 | 1 | UniProt (Q5SHP3) Pfam (PF00237) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 58 | FB (y) | 50S ribosomal protein L23 | polymer | 93 | 10386.3 | 1 | UniProt (Q5SHP0) Pfam (PF00276) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 59 | GB (z) | 50S ribosomal protein L24 | polymer | 101 | 11181.7 | 1 | UniProt (Q5SHP9) Pfam (PF00467) Pfam (PF17136) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 60 | AC, AD, AE, AF, AG... (1, 4, q, t, u...) | MAGNESIUM ION | non-polymer | 24.3 | 462 | Chemie (MG) | |||
| 61 | NS, PS, XS (C, M, e) | ZINC ION | non-polymer | 65.4 | 3 | Chemie (ZN) | |||
| 62 | US (U) | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 1 | Chemie (GDP) |
Sequence modifications
4: 6 - 2897 (GenBank: 55771382)
| PDB | External Database | Details |
|---|---|---|
| G 1041 | C 10326 | conflict |
| A 2133 | G 11394 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 59 |
| Total formula weight | 2291890.7 | |
| Non-Polymers* | Number of molecules | 466 |
| Total formula weight | 11868.3 | |
| All* | Total formula weight | 2303759.1 |
