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5OQL

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Periodic tryptophan protein 2-like proteinpolymer904100817.51UniProt (G0SF93)
Pfam (PF00400)
Pfam (PF04003)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)Utp1
2B
(B)
Utp2polymer907103960.71UniProt (G0SDW0)
Pfam (PF04147)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
3C
(C)
Utp3polymer64873214.61UniProt (G0S4H3)
Pfam (PF09368)
Pfam (PF04000)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
4D
(D)
Utp4polymer88497696.51UniProt (G0SCT7)
Pfam (PF00400)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
5E
(E)
Utp6polymer41446924.81UniProt (G0S387)
Pfam (PF08640)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
6F
(F)
Utp7polymer55863629.41UniProt (G0RZ99)
Pfam (PF00400)
Pfam (PF08149)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
7G
(G)
Utp10polymer1802198508.41UniProt (G0S5L1)
Pfam (PF12397)
Pfam (PF08146)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
8H
(H)
U3 small nucleolar RNA-associated protein 11polymer27031379.71UniProt (G0SF32)
Pfam (PF03998)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)U3 snoRNA-associated protein 11, Utp11
9I
(I)
Utp12polymer962107573.01UniProt (G0RZL9)
Pfam (PF00400)
Pfam (PF04003)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
10J
(J)
Utp13polymer912100430.41UniProt (G0SG95)
Pfam (PF00400)
Pfam (PF08625)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
11K
(K)
Utp14polymer938104741.41UniProt (G0S8Y4)
Pfam (PF04615)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
12L
(L)
Utp15polymer55760524.11UniProt (G0SEI5)
Pfam (PF00400)
Pfam (PF09384)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
13M
(M)
Utp17polymer960105039.71UniProt (G0SCS8)
Pfam (PF00400)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
14N
(N)
Utp18polymer61869055.11UniProt (G0SBN9)Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
15O
(O)
Putative U3 snoRNP proteinpolymer1049115122.01UniProt (G0S872)
Pfam (PF00400)
Pfam (PF04192)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)Utp21
16P
(P)
Utp24polymer19422267.21UniProt (G0SE30)
Pfam (PF04900)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
17Q
(Q)
Utp30polymer39143700.51UniProt (G0S7X0)
Pfam (PF00687)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
18R, S
(R, S)
Nop1polymer31332960.82UniProt (G0SGY2)
Pfam (PF01269)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
19T
(T)
Putative nucleolar proteinpolymer52357830.71UniProt (G0S2U4)
Pfam (PF08156)
Pfam (PF01798)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)Nop56
20U
(U)
Nop58polymer58264292.11UniProt (G0RYF6)
Pfam (PF08156)
Pfam (PF01798)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
21V, W
(V, W)
Snu13polymer12713831.92UniProt (G0SGM0)
Pfam (PF01248)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
22X
(X)
Rrp9polymer63069610.41UniProt (G0SG51)
Pfam (PF00400)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
23Y
(Y)
RNA 3'-terminal phosphate cyclase-like proteinpolymer41143399.81UniProt (G0S0B1)
Pfam (PF01137)
Pfam (PF05189)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)Rcl1
24Z
(Z)
Bms1polymer1163134172.31UniProt (G0S445)
Pfam (PF08142)
Pfam (PF04950)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
25AA
(a)
Imp3polymer18321802.41UniProt (G0SDL4)
Pfam (PF00163)
Pfam (PF01479)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
26BA
(b)
Putative U3 small nucleolar ribonucleoproteinpolymer29734216.31UniProt (G0SE90)
Pfam (PF04427)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)Imp4
27CA
(c)
Putative U3 small nucleolar ribonucleoprotein proteinpolymer78586082.11UniProt (G0S9I7)
Pfam (PF04006)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)Mpp10
28DA
(d)
Sof1polymer44650869.81UniProt (G0RY94)
Pfam (PF00400)
Pfam (PF04158)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
29EA, FA
(e, f)
Emg1polymer25227936.22UniProt (G0SAY9)
Pfam (PF03587)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
30GA
(g)
KRR1 small subunit processome componentpolymer32237500.81UniProt (G0S3V7)
Pfam (PF17903)
Pfam (PF21800)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)KRR-R motif-containing protein 1
31HA
(h)
Pre-rRNA-processing protein PNO1polymer25928715.01UniProt (G0S3T2)
Pfam (PF22891)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)Dim2
32IA, JA
(i, j)
RNA cytidine acetyltransferasepolymer1073119795.12UniProt (G0S273)
Pfam (PF08351)
Pfam (PF05127)
Pfam (PF13718)
Pfam (PF13725)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)18S rRNA cytosine acetyltransferase, Kre33
33KA
(k)
Fcf2polymer20322569.11UniProt (G0S4E3)
Pfam (PF08698)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
34LA
(l)
40S ribosomal protein S1polymer25529245.21UniProt (G0S7T8)
Pfam (PF01015)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)eS1
35MA
(m)
40S ribosomal protein S4polymer26429800.81UniProt (G0S1A6)
Pfam (PF08071)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)eS4
36NA
(n)
40S ribosomal protein s5-like proteinpolymer21223679.21UniProt (G0S1Z0)
Pfam (PF00177)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)uS7
37OA
(o)
40S ribosomal protein S6polymer23927490.11UniProt (G0RY43)
Pfam (PF01092)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)eS6
38PA
(p)
40S ribosomal protein S7-like proteinpolymer20323084.71UniProt (G0S8C4)
Pfam (PF01251)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)eS7
39QA
(q)
40S ribosomal protein S8polymer20223102.41UniProt (G0RY45)
Pfam (PF01201)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)eS8
40RA
(r)
40S ribosomal protein s9-like proteinpolymer19022029.81UniProt (G0S0Z4)
Pfam (PF00163)
Pfam (PF01479)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)uS4
41SA
(s)
40S ribosomal protein S13-like proteinpolymer15116912.91UniProt (G0RZM9)
Pfam (PF08069)
Pfam (PF00312)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)uS15
42TA
(t)
40S ribosomal protein S14-like proteinpolymer15016071.51UniProt (G0SFL1)
Pfam (PF00411)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
43UA
(u)
40S ribosomal protein S16-like proteinpolymer14315962.81UniProt (G0SBR7)
Pfam (PF00380)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)uS9
44VA
(v)
40S ribosomal protein S11-like proteinpolymer16118698.21UniProt (G0SF00)
Pfam (PF16205)
Pfam (PF00366)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)eS17
45WA
(w)
40S ribosomal protein S22-like proteinpolymer13014905.51UniProt (G0SHI0)
Pfam (PF00410)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)uS8
46XA
(x)
40S ribosomal protein s23-like proteinpolymer14515934.71UniProt (G0RY17)
Pfam (PF00164)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)uS12
47YA
(y)
40S ribosomal protein S24polymer13615535.31UniProt (P0CU28)
Pfam (PF01282)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)eS24
48ZA
(z)
40S ribosomal protein S28-like proteinpolymer687742.01UniProt (G0S9M9)
Pfam (PF01200)
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)eS28
49AB
(0)
Faf1polymer31134576.61UniProt (G0S5F1)Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
50BB
(1)
35S rRNApolymer2568827801.81Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
51CB
(2)
U3 snoRNApolymer27487992.61Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
52DB
(P)
ZINC IONnon-polymer65.41Chemie (ZN)
Sequence modifications
P: -9 - 2 (PDB: 5OQL)
P: 3 - 184 (UniProt: G0SE30)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains55
Total formula weight3735259.8
Non-Polymers*Number of molecules1
Total formula weight65.4
All*Total formula weight3735325.3
*Water molecules are not included.

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PDB entries from 2025-06-11

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