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5NRI

Crystal structure of Burkholderia pseudomallei D-alanine-D-alanine ligase in complex with AMP and D-Ala-D-Ala

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
D-alanine--D-alanine ligasepolymer31233378.92UniProt (A3NZL3)
Pfam (PF01820)
Pfam (PF07478)
Burkholderia pseudomalleiD-Ala-D-Ala ligase,D-alanylalanine synthetase
2C, N
(A, B)
ADENOSINE MONOPHOSPHATEnon-polymer347.22Chemie (AMP)
3D, E
(A)
D-ALANINEnon-polymer89.12Chemie (DAL)
4F
(A)
MAGNESIUM IONnon-polymer24.31Chemie (MG)
5G, K, O
(A, B)
SULFATE IONnon-polymer96.13Chemie (SO4)
6H, I, J, L, M...
(A, B)
1,2-ETHANEDIOLnon-polymer62.18Chemie (EDO)
7P
(B)
TRIETHYLENE GLYCOLnon-polymer150.21Chemie (PGE)
8T, U
(A, B)
waterwater18.0789Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight66757.9
Non-Polymers*Number of molecules17
Total formula weight1831.8
All*Total formula weight68589.7
*Water molecules are not included.

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PDB entries from 2025-07-16

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