5NN5
Crystal structure of human lysosomal acid-alpha-glucosidase, GAA, in complex with 1-deoxynojirimycin
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Lysosomal alpha-glucosidase | polymer | 872 | 96978.6 | 1 | UniProt (P10253) Pfam (PF00088) Pfam (PF13802) Pfam (PF01055) Pfam (PF21365) In PDB | Homo sapiens (Human) | Acid maltase,Aglucosidase alfa |
2 | B, F | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 2 | In PDB GlyTouCan (G21290RB) | |||
3 | C | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
4 | D | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
5 | E | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 1 | In PDB GlyTouCan (G81315DD) | |||
6 | A | 1-DEOXYNOJIRIMYCIN | non-polymer | 163.2 | 1 | Chemie (NOJ) | |||
7 | A | SULFATE ION | non-polymer | 96.1 | 4 | Chemie (SO4) | |||
8 | A | CHLORIDE ION | non-polymer | 35.5 | 6 | Chemie (CL) | |||
9 | A | 1,2-ETHANEDIOL | non-polymer | 62.1 | 7 | Chemie (EDO) | |||
10 | water | water | 18.0 | 773 | Chemie (HOH) |
Sequence modifications
A: 81 - 952 (UniProt: P10253)
PDB | External Database | Details |
---|---|---|
Arg 199 | His 199 | conflict |
His 223 | Arg 223 | conflict |
Ile 780 | Val 780 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 1 |
Total formula weight | 96978.6 | |
Branched | Number of molecules | 5 |
Total formula weight | 2900.7 | |
Non-Polymers* | Number of molecules | 18 |
Total formula weight | 1194.6 | |
All* | Total formula weight | 101074.0 |