5NJT
Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 16S ribosomal RNA | polymer | 1544 | 500263.2 | 1 | GenBank (225184640) | Bacillus subtilis subsp. subtilis str. 168 | |
| 2 | B (B) | 30S ribosomal protein S2 | polymer | 224 | 25730.9 | 1 | UniProt (P21464) Pfam (PF00318) | Bacillus subtilis subsp. subtilis str. 168 | BS1,Vegetative protein 209,VEG209 |
| 3 | C (C) | 30S ribosomal protein S3 | polymer | 210 | 23488.9 | 1 | UniProt (P21465) Pfam (PF07650) Pfam (PF00189) | Bacillus subtilis subsp. subtilis str. 168 | BS3,BS2 |
| 4 | D (D) | 30S ribosomal protein S4 | polymer | 199 | 22743.1 | 1 | UniProt (P21466) Pfam (PF00163) Pfam (PF01479) | Bacillus subtilis subsp. subtilis str. 168 | BS4 |
| 5 | E (E) | 30S ribosomal protein S5 | polymer | 165 | 17519.4 | 1 | UniProt (P21467) Pfam (PF00333) Pfam (PF03719) | Bacillus subtilis subsp. subtilis str. 168 | BS5 |
| 6 | F (F) | 30S ribosomal protein S6 | polymer | 95 | 11140.5 | 1 | UniProt (P21468) Pfam (PF01250) | Bacillus subtilis subsp. subtilis str. 168 | BS9 |
| 7 | G (G) | 30S ribosomal protein S7 | polymer | 153 | 17530.4 | 1 | UniProt (P21469) Pfam (PF00177) | Bacillus subtilis subsp. subtilis str. 168 | BS7 |
| 8 | H (H) | 30S ribosomal protein S8 | polymer | 131 | 14770.2 | 1 | UniProt (P12879) Pfam (PF00410) | Bacillus subtilis subsp. subtilis str. 168 | BS8 |
| 9 | I (I) | 30S ribosomal protein S9 | polymer | 130 | 14335.5 | 1 | UniProt (P21470) Pfam (PF00380) | Bacillus subtilis subsp. subtilis str. 168 | BS10 |
| 10 | J (J) | 30S ribosomal protein S10 | polymer | 102 | 11687.7 | 1 | UniProt (P21471) Pfam (PF00338) | Bacillus subtilis subsp. subtilis str. 168 | BS13 |
| 11 | K (K) | 30S ribosomal protein S11 | polymer | 118 | 12476.2 | 1 | UniProt (P04969) Pfam (PF00411) | Bacillus subtilis subsp. subtilis str. 168 | BS11 |
| 12 | L (L) | 30S ribosomal protein S12 | polymer | 137 | 15117.5 | 1 | UniProt (P21472) Pfam (PF00164) | Bacillus subtilis subsp. subtilis str. 168 | BS12 |
| 13 | M (M) | 30S ribosomal protein S13 | polymer | 111 | 12599.5 | 1 | UniProt (P20282) Pfam (PF00416) | Bacillus subtilis subsp. subtilis str. 168 | BS14 |
| 14 | N (N) | 30S ribosomal protein S14 | polymer | 60 | 7132.6 | 1 | UniProt (P12878) Pfam (PF00253) | Bacillus subtilis subsp. subtilis str. 168 | 30S ribosomal protein S14 type Z,30S ribosomal protein S14-1,BS-A |
| 15 | O (O) | 30S ribosomal protein S15 | polymer | 88 | 10466.0 | 1 | UniProt (P21473) Pfam (PF00312) | Bacillus subtilis subsp. subtilis str. 168 | BS18 |
| 16 | P (P) | 30S ribosomal protein S16 | polymer | 89 | 10022.6 | 1 | UniProt (P21474) Pfam (PF00886) | Bacillus subtilis subsp. subtilis str. 168 | BS17 |
| 17 | Q (Q) | 30S ribosomal protein S17 | polymer | 86 | 10089.8 | 1 | UniProt (P12874) Pfam (PF00366) | Bacillus subtilis subsp. subtilis str. 168 | BS16 |
| 18 | R (R) | 30S ribosomal protein S18 | polymer | 71 | 8245.7 | 1 | UniProt (P21475) Pfam (PF01084) | Bacillus subtilis subsp. subtilis str. 168 | BS21 |
| 19 | S (S) | 30S ribosomal protein S19 | polymer | 80 | 9185.7 | 1 | UniProt (P21476) Pfam (PF00203) | Bacillus subtilis subsp. subtilis str. 168 | BS19 |
| 20 | T (T) | 30S ribosomal protein S20 | polymer | 86 | 9393.9 | 1 | UniProt (P21477) Pfam (PF01649) | Bacillus subtilis subsp. subtilis str. 168 | BS20 |
| 21 | U (U) | 23S ribosomal RNA | polymer | 2923 | 947975.2 | 1 | GenBank (467326) | Bacillus subtilis subsp. subtilis str. 168 | |
| 22 | V (V) | 5S ribosomal RNA | polymer | 112 | 36157.5 | 1 | GenBank (728882887) | Bacillus subtilis subsp. subtilis str. 168 | |
| 23 | W (W) | 50S ribosomal protein L2 | polymer | 275 | 30074.8 | 1 | UniProt (P42919) Pfam (PF00181) Pfam (PF03947) | Bacillus subtilis subsp. subtilis str. 168 | BL2 |
| 24 | X (X) | 50S ribosomal protein L3 | polymer | 207 | 22463.0 | 1 | UniProt (P42920) Pfam (PF00297) | Bacillus subtilis subsp. subtilis str. 168 | BL3 |
| 25 | Y (Y) | 50S ribosomal protein L4 | polymer | 205 | 22222.7 | 1 | UniProt (P42921) Pfam (PF00573) | Bacillus subtilis subsp. subtilis str. 168 | |
| 26 | Z (Z) | 50S ribosomal protein L5 | polymer | 178 | 20046.4 | 1 | UniProt (P12877) Pfam (PF00281) Pfam (PF00673) | Bacillus subtilis subsp. subtilis str. 168 | BL6 |
| 27 | AA (a) | 50S ribosomal protein L6 | polymer | 175 | 19124.9 | 1 | UniProt (P46898) Pfam (PF00347) | Bacillus subtilis subsp. subtilis str. 168 | BL10 |
| 28 | BA (b) | 50S ribosomal protein L10 | polymer | 123 | 13607.5 | 1 | UniProt (P42923) Pfam (PF00466) | Bacillus subtilis subsp. subtilis str. 168 | BL5,Cold acclimatization protein,CAP,Vegetative protein 300,VEG300 |
| 29 | CA (c) | 50S ribosomal protein L13 | polymer | 142 | 16017.6 | 1 | UniProt (P70974) Pfam (PF00572) | Bacillus subtilis subsp. subtilis str. 168 | |
| 30 | DA (d) | 50S ribosomal protein L14 | polymer | 122 | 13175.3 | 1 | UniProt (P12875) Pfam (PF00238) | Bacillus subtilis subsp. subtilis str. 168 | |
| 31 | EA (e) | 50S ribosomal protein L15 | polymer | 146 | 15410.7 | 1 | UniProt (P19946) Pfam (PF00828) | Bacillus subtilis subsp. subtilis str. 168 | |
| 32 | FA (f) | 50S ribosomal protein L16 | polymer | 138 | 15619.5 | 1 | UniProt (P14577) Pfam (PF00252) | Bacillus subtilis subsp. subtilis str. 168 | |
| 33 | GA (g) | 50S ribosomal protein L17 | polymer | 119 | 13643.6 | 1 | UniProt (P20277) Pfam (PF01196) | Bacillus subtilis subsp. subtilis str. 168 | BL15,BL21 |
| 34 | HA (h) | 50S ribosomal protein L18 | polymer | 120 | 12993.8 | 1 | UniProt (P46899) Pfam (PF00861) | Bacillus subtilis subsp. subtilis str. 168 | BL16 |
| 35 | IA (i) | 50S ribosomal protein L19 | polymer | 114 | 13285.7 | 1 | UniProt (O31742) Pfam (PF01245) | Bacillus subtilis subsp. subtilis str. 168 | |
| 36 | JA (j) | 50S ribosomal protein L20 | polymer | 117 | 13408.8 | 1 | UniProt (P55873) Pfam (PF00453) | Bacillus subtilis subsp. subtilis str. 168 | |
| 37 | KA (k) | 50S ribosomal protein L21 | polymer | 101 | 11164.9 | 1 | UniProt (P26908) Pfam (PF00829) | Bacillus subtilis subsp. subtilis str. 168 | BL20 |
| 38 | LA (l) | 50S ribosomal protein L22 | polymer | 109 | 12035.1 | 1 | UniProt (P42060) Pfam (PF00237) | Bacillus subtilis subsp. subtilis str. 168 | |
| 39 | MA (m) | 50S ribosomal protein L23 | polymer | 93 | 10778.6 | 1 | UniProt (P42924) Pfam (PF00276) | Bacillus subtilis subsp. subtilis str. 168 | |
| 40 | NA (n) | 50S ribosomal protein L24 | polymer | 100 | 10790.7 | 1 | UniProt (P0CI78) Pfam (PF00467) Pfam (PF17136) | Bacillus subtilis subsp. subtilis str. 168 | 12 kDa DNA-binding protein,BL23,HPB12 |
| 41 | OA (o) | 50S ribosomal protein L27 | polymer | 82 | 8956.1 | 1 | UniProt (P05657) Pfam (PF01016) | Bacillus subtilis subsp. subtilis str. 168 | BL24,BL30 |
| 42 | PA (p) | 50S ribosomal protein L32 | polymer | 54 | 6184.4 | 1 | UniProt (O34687) Pfam (PF01783) | Bacillus subtilis subsp. subtilis str. 168 | |
| 43 | QA (q) | 50S ribosomal protein L33 1 | polymer | 48 | 5786.7 | 1 | UniProt (P56849) Pfam (PF00471) | Bacillus subtilis subsp. subtilis str. 168 | |
| 44 | RA (r) | 50S ribosomal protein L34 | polymer | 44 | 5271.3 | 1 | UniProt (P05647) Pfam (PF00468) | Bacillus subtilis subsp. subtilis str. 168 | |
| 45 | SA (s) | 50S ribosomal protein L35 | polymer | 64 | 7320.8 | 1 | UniProt (P55874) Pfam (PF01632) | Bacillus subtilis subsp. subtilis str. 168 | |
| 46 | TA (t) | 50S ribosomal protein L36 | polymer | 36 | 4187.2 | 1 | UniProt (P20278) Pfam (PF00444) | Bacillus subtilis subsp. subtilis str. 168 | BL38,Ribosomal protein B,Ribosomal protein II |
| 47 | UA (u) | 50S ribosomal protein L28 | polymer | 58 | 6367.5 | 1 | UniProt (P37807) Pfam (PF00830) | Bacillus subtilis subsp. subtilis str. 168 | |
| 48 | VA (v) | 50S ribosomal protein L29 | polymer | 65 | 7598.8 | 1 | UniProt (P12873) Pfam (PF00831) | Bacillus subtilis subsp. subtilis str. 168 | |
| 49 | WA (w) | 50S ribosomal protein L30 | polymer | 58 | 6519.6 | 1 | UniProt (P19947) Pfam (PF00327) | Bacillus subtilis subsp. subtilis str. 168 | BL27 |
| 50 | XA (y) | 50S ribosomal protein L31 | polymer | 64 | 7216.2 | 1 | UniProt (Q03223) Pfam (PF01197) | Bacillus subtilis subsp. subtilis str. 168 | |
| 51 | YA (x) | Ribosome hibernation promotion factor | polymer | 104 | 12356.0 | 1 | UniProt (P28368) Pfam (PF02482) | Bacillus subtilis subsp. subtilis str. 168 | HPF,Hst23,Putative sigma-54 modulation protein,SigL modulation protein |
Sequence modifications
U: 3 - 2925 (GenBank: 467326)
x: 1 - 104 (UniProt: P28368)
| PDB | External Database | Details |
|---|---|---|
| C 1558 | G 76866 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Glu 103 | Gly 103 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 51 |
| Total formula weight | 2111700.3 | |
| All* | Total formula weight | 2111700.3 |
