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5NHD

Crystal structure of xylose isomerase from Piromyces E2 in complex with 2 Ni2+ ions and xylose

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C, D
(A, B, C, D)
Xylose isomerasepolymer43749458.74UniProt (Q9P8C9)
UniProt (by SIFTS) (A0ACD6B9F5)
Piromyces sp. E2
2E, EA, F, FA, M...
(A, D, B, C)
NICKEL (II) IONnon-polymer58.78Chemie (NI)
PubChem (934)
3G, GA, O, Y
(A, D, B, C)
D-xylosenon-polymer150.14Chemie (XLS)
PubChem (854)
PubChem (8985)
PubChem (25244114)
PubChem (65550)
PubChem (66308)
PubChem (90428)
PubChem (95259)
PubChem (57557845)
PubChem (58332771)
PubChem (644160)
PubChem (644176)
PubChem (89052457)
PubChem (5311110)
PubChem (5460291)
PubChem (12306953)
PubChem (12306954)
PubChem (130831430)
PubChem (135055741)
4AA, BA, H, J, JA...
(C, A, D, B)
beta-D-xylopyranosenon-polymer150.110Chemie (XYP)
5HA, I, IA, S, Z
(D, A, B, C)
alpha-D-xylopyranosenon-polymer150.15Chemie (XYS)
6CA, DA, L, U, V
(C, A, B)
SULFATE IONnon-polymer96.15Chemie (SO4)
7KA, LA, MA, NA
(A, B, C, D)
waterwater18.01751Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight197834.7
Non-Polymers*Number of molecules32
Total formula weight3802.3
All*Total formula weight201637.0
*Water molecules are not included.

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PDB entries from 2026-05-06

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