5NET
Localised Reconstruction of Integrin alpha V beta 6 bound to Foot and Mouth Disease Virus O1 Manisa - Pose A.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | 1 | O1 Manisa VP1 | polymer | 208 | 22850.9 | 1 | UniProt (Q6PMW3) Pfam (PF22663) In PDB | Foot-and-mouth disease virus | |
2 | 2 | O1 Manisa VP2 | polymer | 218 | 24417.5 | 1 | UniProt (Q6PMW3) Pfam (PF00073) UniProt (by SIFTS) (D1H101) In PDB | Foot-and-mouth disease virus | |
3 | 3 | O1 Manisa VP3 | polymer | 220 | 23952.9 | 1 | UniProt (Q80B23) Pfam (PF00073) UniProt (by SIFTS) (Q6PMW3) In PDB | Foot-and-mouth disease virus | |
4 | 4 | O1 Manisa VP4 | polymer | 85 | 8766.1 | 1 | UniProt (E1ACS1) Pfam (PF08935) UniProt (by SIFTS) (D1H101) In PDB | Foot-and-mouth disease virus | |
5 | A | Integrin alpha-V | polymer | 594 | 65353.3 | 1 | UniProt (P06756) Pfam (PF01839) Pfam (PF08441) In PDB | Homo sapiens (Human) | Vitronectin receptor subunit alpha |
6 | B | Integrin beta-6 | polymer | 470 | 51534.6 | 1 | UniProt (P18564) Pfam (PF00362) Pfam (PF18372) Pfam (PF17205) In PDB | Homo sapiens (Human) | |
7 | C, D | alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 2 | In PDB GlyTouCan (G62182OO) | |||
8 | E | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose | branched | 342.3 | 1 | In PDB BIRD (PRD_900111) GlyTouCan (G53402KW) | 2alpha-alpha-mannobiose | ||
9 | F | alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 1 | In PDB GlyTouCan (G48068RF) | |||
10 | G | alpha-D-mannopyranose-(1-4)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 1 | In PDB GlyTouCan (G81874LD) | |||
11 | 3, A | alpha-D-mannopyranose | non-polymer | 180.2 | 3 | Chemie (MAN) | |||
12 | A, B | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 3 | Chemie (NAG) | |||
13 | A | CALCIUM ION | non-polymer | 40.1 | 4 | Chemie (CA) |
Sequence modifications
2: 1 - 218 (UniProt: Q6PMW3)
3: 1 - 220 (UniProt: Q80B23)
A: 1 - 594 (UniProt: P06756)
B: 5 - 471 (UniProt: P18564)
PDB | External Database | Details |
---|---|---|
Tyr 93 | Ser 379 | conflict |
PDB | External Database | Details |
---|---|---|
Arg 56 | His 560 | conflict |
Thr 168 | Ala 672 | conflict |
PDB | External Database | Details |
---|---|---|
Cys 400 | Met 430 | conflict |
PDB | External Database | Details |
---|---|---|
Cys 267 | Ile 287 | conflict |
Asn 449 | His 469 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 6 |
Total formula weight | 196875.3 | |
Branched | Number of molecules | 5 |
Total formula weight | 3012.7 | |
Non-Polymers* | Number of molecules | 10 |
Total formula weight | 1364.4 | |
All* | Total formula weight | 201252.4 |