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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

5MGP

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A23S ribosomal RNApolymer2903941305.31GenBank (802133627)Escherichia coli
2B5S ribosomal RNApolymer12038813.11GenBank (1028480521)Escherichia coli
3C50S ribosomal protein L2polymer27129663.21UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Escherichia coli
4D50S ribosomal protein L3polymer20922277.51UniProt (P60438)
Pfam (PF00297)
In PDB		Escherichia coli
5E50S ribosomal protein L4polymer20122121.61UniProt (P60723)
Pfam (PF00573)
In PDB		Escherichia coli
6F50S ribosomal protein L5polymer17720073.21UniProt (P62399)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Escherichia coli
7G50S ribosomal protein L6polymer17618801.61UniProt (P0AG55)
Pfam (PF00347)
In PDB		Escherichia coli
8H50S ribosomal protein L9polymer14915789.01UniProt (P0A7R1)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Escherichia coli
9J50S ribosomal protein L13polymer14216050.61UniProt (P0AA10)
Pfam (PF00572)
In PDB		Escherichia coli
10K50S ribosomal protein L14polymer12213451.91UniProt (P0ADY3)
Pfam (PF00238)
In PDB		Escherichia coli
11L50S ribosomal protein L15polymer14314877.31UniProt (P02413)
Pfam (PF00828)
In PDB		Escherichia coli
12M50S ribosomal protein L16polymer13615312.31UniProt (P0ADY7)
Pfam (PF00252)
In PDB		Escherichia coli
13N50S ribosomal protein L17polymer12013721.91UniProt (P0AG44)
Pfam (PF01196)
In PDB		Escherichia coli
14O50S ribosomal protein L18polymer11612663.51UniProt (P0C018)
Pfam (PF00861)
In PDB		Escherichia coli
15P50S ribosomal protein L19polymer11413028.11UniProt (P0A7K6)
Pfam (PF01245)
In PDB		Escherichia coli
16Q50S ribosomal protein L20polymer11713396.81UniProt (P0A7L3)
Pfam (PF00453)
In PDB		Escherichia coli
17R50S ribosomal protein L21polymer10311586.41UniProt (P0AG48)
Pfam (PF00829)
In PDB		Escherichia coli
18S50S ribosomal protein L22polymer11012253.41UniProt (P61175)
Pfam (PF00237)
In PDB		Escherichia coli
19T50S ribosomal protein L23polymer9310546.51UniProt (P0ADZ0)
Pfam (PF00276)
In PDB		Escherichia coli
20U50S ribosomal protein L24polymer10211078.91UniProt (P60624)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Escherichia coli
21V50S ribosomal protein L25polymer9410713.51UniProt (P68919)
Pfam (PF01386)
In PDB		Escherichia coli
22W50S ribosomal protein L27polymer758174.41UniProt (P0A7L8)
Pfam (PF01016)
In PDB		Escherichia coli
23X50S ribosomal protein L28polymer778896.41UniProt (P0A7M2)
Pfam (PF00830)
In PDB		Escherichia coli
24Y50S ribosomal protein L29polymer637286.51UniProt (P0A7M6)
Pfam (PF00831)
In PDB		Escherichia coli
25Z50S ribosomal protein L30polymer586423.61UniProt (P0AG51)
Pfam (PF00327)
In PDB		Escherichia coli
26050S ribosomal protein L32polymer566332.21UniProt (P0A7N4)
Pfam (PF01783)
In PDB		Escherichia coli
27150S ribosomal protein L33polymer505814.81UniProt (P0A7N9)
Pfam (PF00471)
In PDB		Escherichia coli
28250S ribosomal protein L34polymer465397.51UniProt (P0A7P5)
Pfam (PF00468)
In PDB		Escherichia coli
29350S ribosomal protein L35polymer647181.81UniProt (P0A7Q1)
Pfam (PF01632)
In PDB		Escherichia coliRibosomal protein A
30450S ribosomal protein L36polymer384377.41UniProt (P0A7Q6)
Pfam (PF00444)
In PDB		Escherichia coliRibosomal protein B
31650S ribosomal protein L31polymer667516.71UniProt (P0A7M9)
Pfam (PF01197)
In PDB		Escherichia coli
32a16S ribosomal RNApolymer1539498725.41GenBank (802133627)Escherichia coli
33b30S ribosomal protein S2polymer21824253.91UniProt (P0A7V0)
Pfam (PF00318)
In PDB		Escherichia coli
34c30S ribosomal protein S3polymer20623078.81UniProt (P0A7V3)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Escherichia coli
35d30S ribosomal protein S4polymer20523383.01UniProt (P0A7V8)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Escherichia coli
36e30S ribosomal protein S5polymer15716532.11UniProt (P0A7W1)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Escherichia coli
37f30S ribosomal protein S6polymer10011669.41UniProt (P02358)
Pfam (PF01250)
In PDB		Escherichia coli
38g30S ribosomal protein S7polymer15116861.51UniProt (P02359)
Pfam (PF00177)
In PDB		Escherichia coli
39h30S ribosomal protein S8polymer12914015.41UniProt (P0A7W7)
Pfam (PF00410)
In PDB		Escherichia coli
40i30S ribosomal protein S9polymer12714554.91UniProt (P0A7X3)
Pfam (PF00380)
In PDB		Escherichia coli
41j30S ribosomal protein S10polymer9811197.01UniProt (P0A7R5)
Pfam (PF00338)
In PDB		Escherichia coli
42k30S ribosomal protein S11polymer11612388.11UniProt (P0A7R9)
Pfam (PF00411)
In PDB		Escherichia coli
43l30S ribosomal protein S12polymer12313637.01UniProt (P0A7S3)
Pfam (PF00164)
In PDB		Escherichia coli
44m30S ribosomal protein S13polymer11412625.81UniProt (P0A7S9)
Pfam (PF00416)
In PDB		Escherichia coli
45n30S ribosomal protein S14polymer10111546.41UniProt (P0AG59)
Pfam (PF00253)
In PDB		Escherichia coli
46o30S ribosomal protein S15polymer8810159.61UniProt (P0ADZ4)
Pfam (PF00312)
In PDB		Escherichia coli
47p30S ribosomal protein S16polymer829207.61UniProt (P0A7T3)
Pfam (PF00886)
In PDB		Escherichia coli
48q30S ribosomal protein S17polymer809263.91UniProt (P0AG63)
Pfam (PF00366)
In PDB		Escherichia coli
49r30S ribosomal protein S18polymer657606.81UniProt (P0A7T7)
Pfam (PF01084)
In PDB		Escherichia coli
50s30S ribosomal protein S19polymer799057.61UniProt (P0A7U3)
Pfam (PF00203)
In PDB		Escherichia coli
51t30S ribosomal protein S20polymer859506.21UniProt (P0A7U7)
Pfam (PF01649)
In PDB		Escherichia coli
52u30S ribosomal protein S21polymer657763.11UniProt (P68679)
Pfam (PF01165)
In PDB		Escherichia coli
53vmRNApolymer61866.21Escherichia coli
54wAlternative ribosome-rescue factor Apolymer455265.11UniProt (P36675)
Pfam (PF03889)
In PDB		Escherichia coli
55xP-site tRNApolymer7724846.71GenBank (1052521625)Escherichia coli
56zPeptide chain release factor 2polymer35940566.81UniProt (P07012)
Pfam (PF03462)
Pfam (PF00472)
In PDB		Escherichia coliRF-2
Sequence modifications
A: 1 - 2903 (GenBank: 802133627)
PDBExternal DatabaseDetails
C 747U 2724742conflict
G 1847A 2723642conflict
A 2069G 2723420conflict
B: 1 - 120 (GenBank: 1028480521)
PDBExternal DatabaseDetails
A 120U 834456conflict
n: 1 - 101 (UniProt: P0AG59)
PDBExternal DatabaseDetails
Ala 35-insertion
z: 6 - 364 (UniProt: P07012)
PDBExternal DatabaseDetails
Ala 251Gly 251conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains56
Total formula weight2184505.0
All*Total formula weight2184505.0
*Water molecules are not included.

218853

PDB entries from 2024-04-24

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