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5MDW

Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1123S ribosomal RNApolymer2904941832.61GenBank (802133627)Escherichia coli
2216S ribosomal RNApolymer1534497406.01GenBank (802133627)Escherichia coli
335S ribosomal RNApolymer12038790.11GenBank (1028480521)Escherichia coli
44mRNApolymer185922.61Escherichia coli
55fMet-NH-tRNA(fMet)polymer7824966.11Escherichia coli
66Alternative ribosome-rescue factor Apolymer617147.21UniProt (P36675)
Pfam (PF03889)
In PDB
Escherichia coli
77Peptide chain release factor 2polymer36541314.71UniProt (P07012)
Pfam (PF03462)
Pfam (PF00472)
In PDB
Escherichia coliRF-2
8B50S ribosomal protein L2polymer27329923.61UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
In PDB
Escherichia coli
9C50S ribosomal protein L3polymer20922277.51UniProt (P60438)
Pfam (PF00297)
In PDB
Escherichia coli
10D50S ribosomal protein L4polymer20122121.61UniProt (P60723)
Pfam (PF00573)
In PDB
Escherichia coli
11E50S ribosomal protein L5polymer17920333.61UniProt (P62399)
Pfam (PF00281)
Pfam (PF00673)
In PDB
Escherichia coli
12F50S ribosomal protein L6polymer17718932.81UniProt (P0AG55)
Pfam (PF00347)
In PDB
Escherichia coli
13G50S ribosomal protein L9polymer14915789.01UniProt (P0A7R1)
Pfam (PF01281)
Pfam (PF03948)
In PDB
Escherichia coli
14H50S ribosomal protein L10polymer16517736.61UniProt (P0A7J3)
Pfam (PF00466)
In PDB
Escherichia coli50S ribosomal protein L8
15I50S ribosomal protein L11polymer14214894.41UniProt (P0A7J7)
Pfam (PF03946)
Pfam (PF00298)
In PDB
Escherichia coli
16J50S ribosomal protein L13polymer14216050.61UniProt (P0AA10)
Pfam (PF00572)
In PDB
Escherichia coli
17K50S ribosomal protein L14polymer12313565.11UniProt (P0ADY3)
Pfam (PF00238)
In PDB
Escherichia coli
18L50S ribosomal protein L15polymer14415008.51UniProt (P02413)
Pfam (PF00828)
In PDB
Escherichia coli
19M50S ribosomal protein L16polymer13615312.31UniProt (P0ADY7)
Pfam (PF00252)
In PDB
Escherichia coli
20N50S ribosomal protein L17polymer12714393.71UniProt (P0AG44)
Pfam (PF01196)
In PDB
Escherichia coli
21O50S ribosomal protein L18polymer11712794.71UniProt (P0C018)
Pfam (PF00861)
In PDB
Escherichia coli
22P50S ribosomal protein L19polymer11513159.31UniProt (P0A7K6)
Pfam (PF01245)
In PDB
Escherichia coli
23Q50S ribosomal protein L20polymer11813528.01UniProt (P0A7L3)
Pfam (PF00453)
In PDB
Escherichia coli
24R50S ribosomal protein L21polymer10311586.41UniProt (P0AG48)
Pfam (PF00829)
In PDB
Escherichia coli
25S50S ribosomal protein L22polymer11012253.41UniProt (P61175)
Pfam (PF00237)
In PDB
Escherichia coli
26T50S ribosomal protein L23polymer10011222.21UniProt (P0ADZ0)
Pfam (PF00276)
In PDB
Escherichia coli
27U50S ribosomal protein L24polymer10411339.31UniProt (P60624)
Pfam (PF00467)
Pfam (PF17136)
In PDB
Escherichia coli
28V50S ribosomal protein L25polymer9410713.51UniProt (P68919)
Pfam (PF01386)
In PDB
Escherichia coli
29W50S ribosomal protein L27polymer859146.51UniProt (P0A7L8)
Pfam (PF01016)
In PDB
Escherichia coli
30X50S ribosomal protein L28polymer789027.61UniProt (P0A7M2)
Pfam (PF00830)
In PDB
Escherichia coli
31Y50S ribosomal protein L29polymer637286.51UniProt (P0A7M6)
Pfam (PF00831)
In PDB
Escherichia coli
32Z50S ribosomal protein L30polymer596554.81UniProt (P0AG51)
Pfam (PF00327)
In PDB
Escherichia coli
33a50S ribosomal protein L31polymer707887.11UniProt (P0A7M9)
Pfam (PF01197)
In PDB
Escherichia coli
34b50S ribosomal protein L32polymer576463.41UniProt (P0A7N4)
Pfam (PF01783)
In PDB
Escherichia coli
35c50S ribosomal protein L33polymer556388.61UniProt (P0A7N9)
Pfam (PF00471)
In PDB
Escherichia coli
36d50S ribosomal protein L34polymer465397.51UniProt (P0A7P5)
Pfam (PF00468)
In PDB
Escherichia coli
37e50S ribosomal protein L35polymer657313.01UniProt (P0A7Q1)
Pfam (PF01632)
In PDB
Escherichia coliRibosomal protein A
38f50S ribosomal protein L36polymer384377.41UniProt (P0A7Q6)
Pfam (PF00444)
In PDB
Escherichia coliRibosomal protein B
39g30S ribosomal protein S2polymer24126781.71UniProt (P0A7V0)
Pfam (PF00318)
In PDB
Escherichia coli
40h30S ribosomal protein S3polymer23326031.31UniProt (P0A7V3)
Pfam (PF07650)
Pfam (PF00189)
In PDB
Escherichia coli
41i30S ribosomal protein S4polymer20623514.21UniProt (P0A7V8)
Pfam (PF00163)
Pfam (PF01479)
In PDB
Escherichia coli
42j30S ribosomal protein S5polymer16717629.41UniProt (P0A7W1)
Pfam (PF00333)
Pfam (PF03719)
In PDB
Escherichia coli
43k30S ribosomal protein S6polymer13515727.51UniProt (P02358)
Pfam (PF01250)
In PDB
Escherichia coli
44l30S ribosomal protein S7polymer17920055.21UniProt (P02359)
Pfam (PF00177)
In PDB
Escherichia coli
45m30S ribosomal protein S8polymer13014146.61UniProt (P0A7W7)
Pfam (PF00410)
In PDB
Escherichia coli
46n30S ribosomal protein S9polymer13014886.31UniProt (P0A7X3)
Pfam (PF00380)
In PDB
Escherichia coli
47o30S ribosomal protein S10polymer10311755.61UniProt (P0A7R5)
Pfam (PF00338)
In PDB
Escherichia coli
48p30S ribosomal protein S11polymer12913871.01UniProt (P0A7R9)
Pfam (PF00411)
In PDB
Escherichia coli
49q30S ribosomal protein S12polymer12413814.21UniProt (P0A7S3)
Pfam (PF00164)
In PDB
Escherichia coli
50r30S ribosomal protein S13polymer11813128.51UniProt (P0A7S9)
Pfam (PF00416)
In PDB
Escherichia coli
51s30S ribosomal protein S14polymer10111606.61UniProt (P0AG59)
Pfam (PF00253)
In PDB
Escherichia coli
52t30S ribosomal protein S15polymer8910290.81UniProt (P0ADZ4)
Pfam (PF00312)
In PDB
Escherichia coli
53u30S ribosomal protein S16polymer829207.61UniProt (P0A7T3)
Pfam (PF00886)
In PDB
Escherichia coli
54v30S ribosomal protein S17polymer849724.51UniProt (P0AG63)
Pfam (PF00366)
In PDB
Escherichia coli
55w30S ribosomal protein S18polymer759005.51UniProt (P0A7T7)
Pfam (PF01084)
In PDB
Escherichia coli
56x30S ribosomal protein S19polymer9210455.41UniProt (P0A7U3)
Pfam (PF00203)
In PDB
Escherichia coli
57y30S ribosomal protein S20polymer879708.51UniProt (P0A7U7)
Pfam (PF01649)
In PDB
Escherichia coli
58z30S ribosomal protein S21polymer718524.01UniProt (P68679)
Pfam (PF01165)
In PDB
Escherichia coli
591, 2, 5, b, i...MAGNESIUM IONnon-polymer24.3438Chemie (MG)
605N-FORMYLMETHIONINEnon-polymer177.21Chemie (FME)
61a, fZINC IONnon-polymer65.42Chemie (ZN)
62waterwater18.02Chemie (HOH)
Sequence modifications
1: 1 - 2904 (GenBank: 802133627)
PDBExternal DatabaseDetails
A 887U 2724602conflict
6: 1 - 60 (UniProt: P36675)
PDBExternal DatabaseDetails
His 0-expression tag
Thr 18Ala 18engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains58
Total formula weight2250021.7
Non-Polymers*Number of molecules441
Total formula weight10953.6
All*Total formula weight2260975.3
*Water molecules are not included.

217705

PDB entries from 2024-03-27

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