5MC2
Crystal Structure of Gly278Asp mutant of Human Prolidase with Mn ions and GlyPro ligand
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | Xaa-Pro dipeptidase | polymer | 484 | 53781.0 | 2 | UniProt (P12955) Pfam (PF05195) Pfam (PF00557) | Homo sapiens (Human) | X-Pro dipeptidase,Imidodipeptidase,Peptidase D,Proline dipeptidase,Prolidase |
| 2 | C, J (A, B) | MANGANESE (II) ION | non-polymer | 54.9 | 2 | Chemie (MN) | |||
| 3 | D, K (A, B) | SODIUM ION | non-polymer | 23.0 | 2 | Chemie (NA) | |||
| 4 | E, L (A, B) | GLYCINE | non-polymer | 75.1 | 2 | Chemie (GLY) | Homo sapiens | ||
| 5 | F, M (A, B) | PROLINE | non-polymer | 115.1 | 2 | Chemie (PRO) | Homo sapiens | ||
| 6 | G, H, I, N, O... (A, B) | GLYCEROL | non-polymer | 92.1 | 7 | Chemie (GOL) | |||
| 7 | R, S (A, B) | water | water | 18.0 | 877 | Chemie (HOH) |
Sequence modifications
A, B: 6 - 488 (UniProt: P12955)
| PDB | External Database | Details |
|---|---|---|
| Ala 5 | - | expression tag |
| Asp 278 | Gly 278 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 107562.1 | |
| Non-Polymers* | Number of molecules | 15 |
| Total formula weight | 1180.9 | |
| All* | Total formula weight | 108743.0 |
