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5M4J

Crystal Structure of Wild-Type Human Prolidase with GlyPro ligand

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Xaa-Pro dipeptidasepolymer48453799.12UniProt (P12955)
Pfam (PF05195)
Pfam (PF00557)
Homo sapiens (Human)X-Pro dipeptidase,Imidodipeptidase,Peptidase D,Proline dipeptidase,Prolidase
2C, D, H, I
(A, B)
SODIUM IONnon-polymer23.04Chemie (NA)
3E, J
(A, B)
GLYCINEnon-polymer75.12Chemie (GLY)Homo sapiens
4F, K
(A, B)
PROLINEnon-polymer115.12Chemie (PRO)Homo sapiens
5G, L, M, N, O
(A, B)
GLYCEROLnon-polymer92.15Chemie (GOL)
6P, Q
(A, B)
waterwater18.0951Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight107598.2
Non-Polymers*Number of molecules13
Total formula weight932.8
All*Total formula weight108531.0
*Water molecules are not included.

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PDB entries from 2025-07-30

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