Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

5LZY

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)		uL2polymer25728088.91UniProt (G1TT27)
Pfam (PF00181)
Pfam (PF03947)		Oryctolagus cuniculus (Rabbit)
2B
(B)		uL3polymer40346108.01UniProt (G1TL06)
Pfam (PF00297)		Oryctolagus cuniculus (Rabbit)
3C
(C)		uL4polymer42547727.61Oryctolagus cuniculus (Rabbit)
4D
(D)		60S ribosomal protein L5polymer29734481.81UniProt (G1SYJ6)
UniProt (by SIFTS) (P19949)		Oryctolagus cuniculus (Rabbit)
5E
(E)		60S ribosomal protein L6polymer29133028.31UniProt (G1SKF7)
Pfam (PF03868)
Pfam (PF01159)		Oryctolagus cuniculus (Rabbit)
6F
(F)		uL30polymer24729201.81UniProt (G1TUB1)
Pfam (PF00327)
Pfam (PF08079)		Oryctolagus cuniculus (Rabbit)
7G
(G)		eL8polymer31936221.51UniProt (G1STW0)
Pfam (PF01248)		Oryctolagus cuniculus (Rabbit)
8H
(H)		uL6polymer19221871.41UniProt (G1TX33)
Pfam (PF00347)
UniProt (by SIFTS) (G1SWI6)		Oryctolagus cuniculus (Rabbit)
9I
(I)		Ribosomal protein L10 (Predicted)polymer21424643.11UniProt (B7NZQ2)
Pfam (PF00252)		Oryctolagus cuniculus (Rabbit)Uncharacterized protein
10J
(J)		uL5polymer17820288.51UniProt (G1TUB8)
Pfam (PF00281)
Pfam (PF00673)		Oryctolagus cuniculus (Rabbit)
11K
(L)		eL13polymer21124331.71Oryctolagus cuniculus (Rabbit)
12L
(M)		eL14polymer21823870.51UniProt (G1SZ12)
Pfam (PF01929)		Oryctolagus cuniculus (Rabbit)
13M
(N)		Ribosomal protein L15polymer20424207.31UniProt (G1T0C1)
Pfam (PF00827)		Oryctolagus cuniculus (Rabbit)
14N
(O)		uL13polymer20323533.31Oryctolagus cuniculus (Rabbit)
15O
(P)		uL22polymer18421444.21UniProt (G1TVT6)
Pfam (PF00237)
UniProt (by SIFTS) (G1SCJ6)		Oryctolagus cuniculus (Rabbit)
16P
(Q)		eL18polymer18821699.71Oryctolagus cuniculus (Rabbit)
17Q
(R)		eL19polymer19623535.31Oryctolagus cuniculus (Rabbit)
18R
(S)		eL20polymer17620827.61Oryctolagus cuniculus (Rabbit)
19S
(T)		eL21polymer16018610.01UniProt (G1SHQ2)
Pfam (PF01157)		Oryctolagus cuniculus (Rabbit)
20T
(U)		eL22polymer12814813.01Oryctolagus cuniculus (Rabbit)
21U
(V)		eL14polymer14014892.51UniProt (G1T6D1)
Pfam (PF00238)		Oryctolagus cuniculus (Rabbit)
22V
(W)		eL24polymer15717825.11UniProt (G1SE28)
Pfam (PF01246)		Oryctolagus cuniculus (Rabbit)
23W
(X)		eL23polymer15617768.21UniProt (G1SE76)
Pfam (PF03939)
Pfam (PF00276)		Oryctolagus cuniculus (Rabbit)
24X
(Y)		uL24polymer14517303.41UniProt (G1SQH0)
Pfam (PF16906)
Pfam (PF00467)		Oryctolagus cuniculus (Rabbit)
25Y
(Z)		60S ribosomal protein L27polymer13615835.81UniProt (G1TXF6)
Pfam (PF00467)
Pfam (PF01777)		Oryctolagus cuniculus (Rabbit)
26Z
(a)		uL15polymer14816620.61UniProt (G1SNY0)
Pfam (PF00828)		Oryctolagus cuniculus (Rabbit)
27AA
(b)		eL29polymer24526708.71UniProt (G1SGR6)
Pfam (PF01779)		Oryctolagus cuniculus (Rabbit)
28BA
(c)		eL30polymer11512807.11UniProt (G1TDL2)
Pfam (PF01248)		Oryctolagus cuniculus (Rabbit)
29CA
(d)		eL31polymer12514494.91UniProt (G1SHG0)
Pfam (PF01198)		Oryctolagus cuniculus (Rabbit)
30DA
(e)		eL32polymer13515898.91UniProt (G1U437)
Pfam (PF01655)
UniProt (by SIFTS) (G1TUN8)		Oryctolagus cuniculus (Rabbit)
31EA
(f)		eL33polymer11012580.81UniProt (G1SF08)
Pfam (PF01247)		Oryctolagus cuniculus (Rabbit)
32FA
(g)		eL34polymer11713326.11Oryctolagus cuniculus (Rabbit)
33GA
(h)		uL29polymer12314566.61UniProt (G1SIT5)
Pfam (PF00831)		Oryctolagus cuniculus (Rabbit)
34HA
(i)		60S ribosomal protein L36polymer10512263.81UniProt (G1TTQ5)
Pfam (PF01158)		Oryctolagus cuniculus (Rabbit)
35IA
(j)		eL37polymer9711111.01Oryctolagus cuniculus (Rabbit)
36JA
(k)		eL38polymer708238.91Oryctolagus cuniculus (Rabbit)
37KA
(l)		eL39polymer516455.81UniProt (G1TTN1)
Pfam (PF00832)		Oryctolagus cuniculus (Rabbit)
38LA
(m)		eL40polymer10211699.81Oryctolagus cuniculus (Rabbit)
39MA
(n)		eL41polymer253473.51Oryctolagus cuniculus (Rabbit)
40NA
(o)		eL42polymer10612477.01UniProt (G1U344)
Pfam (PF00935)
UniProt (by SIFTS) (G1T040)		Oryctolagus cuniculus (Rabbit)
41OA
(p)		eL43polymer9210299.41UniProt (G1SY53)
Pfam (PF01780)		Oryctolagus cuniculus (Rabbit)
42PA
(r)		eL28polymer13715783.61UniProt (G1U7L1)
Pfam (PF01778)		Oryctolagus cuniculus (Rabbit)
43QA
(s)		uL10polymer31834380.51Oryctolagus cuniculus (Rabbit)
44RA
(t)		uL11polymer16517847.61UniProt (G1SMR7)
Pfam (PF03946)
Pfam (PF00298)		Oryctolagus cuniculus (Rabbit)
45SA, TA
(2, 3)		tRNApolymer7524102.32Oryctolagus cuniculus (Rabbit)
46UA
(5)		28S ribosomal RNApolymer35431148115.41Oryctolagus cuniculus (Rabbit)
47VA
(7)		5S ribosomal RNApolymer12038691.91Oryctolagus cuniculus (Rabbit)
48WA
(8)		5.8S ribosomal RNApolymer15650143.61Oryctolagus cuniculus (Rabbit)
49XA
(9)		18S ribosomal RNApolymer1869602778.91Oryctolagus cuniculus (Rabbit)
50YA
(AA)		uS2polymer29532958.01Oryctolagus cuniculus (Rabbit)
51ZA
(BB)		40S ribosomal protein S3apolymer26430002.11UniProt (G1SS70)
Pfam (PF01015)		Oryctolagus cuniculus (Rabbit)
52AB
(CC)		uS5polymer29331327.41Oryctolagus cuniculus (Rabbit)
53BB
(DD)		uS3polymer24326715.31UniProt (G1TNM3)
Pfam (PF07650)
Pfam (PF00189)		Oryctolagus cuniculus (Rabbit)
54CB
(EE)		eS4polymer26329654.91Oryctolagus cuniculus (Rabbit)
55DB
(FF)		uS7polymer20422913.51UniProt (G1TFM5)
Pfam (PF00177)		Oryctolagus cuniculus (Rabbit)
56EB
(GG)		40S ribosomal protein S6polymer24928751.91UniProt (G1TM55)
Pfam (PF01092)		Oryctolagus cuniculus (Rabbit)
57FB
(HH)		eS7polymer19422168.91UniProt (G1SVB0)Oryctolagus cuniculus (Rabbit)
58GB
(II)		eS8polymer20824263.41Oryctolagus cuniculus (Rabbit)
59HB
(JJ)		Ribosomal protein S9 (Predicted)polymer19422641.61UniProt (B7NZS8)
Pfam (PF00163)
Pfam (PF01479)		Oryctolagus cuniculus (Rabbit)
60IB
(KK)		eS10polymer16518933.81UniProt (G1TPV3)
Pfam (PF03501)		Oryctolagus cuniculus (Rabbit)
61JB
(LL)		uS17polymer15818468.81UniProt (G1TRM4)
Pfam (PF16205)
Pfam (PF00366)		Oryctolagus cuniculus (Rabbit)
62KB
(MM)		40S ribosomal protein S12polymer13214539.01UniProt (G1SFR8)
Pfam (PF01248)		Oryctolagus cuniculus (Rabbit)
63LB
(NN)		uS15polymer15117259.41UniProt (G1SP51)
Pfam (PF08069)
Pfam (PF00312)		Oryctolagus cuniculus (Rabbit)
64MB
(OO)		uS11polymer16818134.01UniProt (G1T1F0)
Pfam (PF00411)		Oryctolagus cuniculus (Rabbit)
65NB
(PP)		uS19polymer14517049.21UniProt (G1U0Q2)
Pfam (PF00203)		Oryctolagus cuniculus (Rabbit)
66OB
(QQ)		uS9polymer14616477.41UniProt (G1SGX4)
Pfam (PF00380)		Oryctolagus cuniculus (Rabbit)
67PB
(RR)		eS17polymer13515552.11UniProt (G1TU13)
Pfam (PF00833)		Oryctolagus cuniculus (Rabbit)
68QB
(SS)		uS13polymer15217759.81UniProt (G1TPG3)
Pfam (PF00416)		Oryctolagus cuniculus (Rabbit)
69RB
(TT)		eS19polymer14516106.61UniProt (G1TN62)
Pfam (PF01090)		Oryctolagus cuniculus (Rabbit)
70SB
(UU)		uS10polymer11913398.81UniProt (G1SIZ2)
Pfam (PF00338)		Oryctolagus cuniculus (Rabbit)
71TB
(VV)		eS21polymer839124.41Oryctolagus cuniculus (Rabbit)
72UB
(WW)		uS8polymer13014865.61UniProt (G1TG89)
Pfam (PF00410)		Oryctolagus cuniculus (Rabbit)
73VB
(XX)		uS12polymer14315844.71Oryctolagus cuniculus (Rabbit)
74WB
(YY)		eS24polymer13015107.91Oryctolagus cuniculus (Rabbit)
75XB
(ZZ)		eS25polymer12513776.21UniProt (G1TDB3)
Pfam (PF03297)		Oryctolagus cuniculus (Rabbit)
76YB
(aa)		eS26polymer11513047.51Oryctolagus cuniculus (Rabbit)
77ZB
(bb)		40S ribosomal protein S27polymer849480.21UniProt (G1TZ76)
Pfam (PF01667)		Oryctolagus cuniculus (Rabbit)
78AC
(cc)		eS28polymer697855.11UniProt (G1TIB4)
Pfam (PF01200)		Oryctolagus cuniculus (Rabbit)
79BC
(dd)		uS14polymer566690.81UniProt (G1U7M4)
Pfam (PF00253)		Oryctolagus cuniculus (Rabbit)
80CC
(ee)		eS30polymer13314498.91UniProt (G1T8A2)
Pfam (PF00240)
Pfam (PF04758)		Oryctolagus cuniculus (Rabbit)
81DC
(ff)		eS31polymer15618004.01UniProt (G1SK22)
Pfam (PF00240)
Pfam (PF01599)		Oryctolagus cuniculus (Rabbit)
82EC
(gg)		RACK1polymer31735115.71UniProt (G1SJB4)
Pfam (PF00400)		Oryctolagus cuniculus (Rabbit)
83FC
(hh)		mRNA (polyadenylated)polymer82588.71Oryctolagus cuniculus (Rabbit)
84GC
(ii)		Protein pelota homologpolymer40345519.31UniProt (Q9BRX2)
Pfam (PF03463)
Pfam (PF03464)
Pfam (PF03465)		Homo sapiens (Human)
85HC
(jj)		HBS1-like proteinpolymer71078638.01UniProt (Q9Y450)
Pfam (PF08938)
Pfam (PF00009)
Pfam (PF03144)
Pfam (PF03143)		Homo sapiens (Human)ERFS
86AD, AE, AF, AG, AH...
(5, 7, 9, 8, B...)		MAGNESIUM IONnon-polymer24.3236Chemie (MG)
87OL, PL, QC, QL, RC...
(aa, dd, g, ff, j...)		ZINC IONnon-polymer65.48Chemie (ZN)
88RL
(jj)		PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTERnon-polymer521.21Chemie (GCP)
Sequence modifications
B: 2 - 403 (UniProt: G1TL06)
PDBExternal DatabaseDetails
Met 1-initiating methionine
D: 2 - 297 (UniProt: G1SYJ6)
PDBExternal DatabaseDetails
Met 1-initiating methionine
F: 1 - 247 (UniProt: G1TUB1)
PDBExternal DatabaseDetails
Arg 61Gly 61conflict
Arg 93Gly 93conflict
Met 131Val 131conflict
Ile 153Val 153conflict
G: 1 - 77 (PDB: 5LZY)
G: 78 - 319 (UniProt: G1STW0)
PDBExternal DatabaseDetails
Gly 244Cys 167conflict
a: 1 - 148 (UniProt: G1SNY0)
PDBExternal DatabaseDetails
Met 1Gln 1conflict
b: 1 - 226 (UniProt: G1SGR6)
b: 227 - 245 (PDB: 5LZY)
OO: -16 - -5 (PDB: 5LZY)
OO: -4 - 151 (UniProt: G1T1F0)
TT: 1 - 145 (UniProt: G1TN62)
PDBExternal DatabaseDetails
Gly 119Trp 119conflict
ii: 1 - 385 (UniProt: Q9BRX2)
PDBExternal DatabaseDetails
Met 221Leu 221variant
Gly 386-expression tag
Ser 387-expression tag
Glu 388-expression tag
Asn 389-expression tag
Leu 390-expression tag
Tyr 391-expression tag
Phe 392-expression tag
Gln 393-expression tag
Gly 394-expression tag
Ala 395-expression tag
His 396-expression tag
His 397-expression tag
His 398-expression tag
His 399-expression tag
His 400-expression tag
His 401-expression tag
Ser 402-expression tag
Thr 403-expression tag
jj: 1 - 684 (UniProt: Q9Y450)
PDBExternal DatabaseDetails
Met -25-initiating methionine
Asp -24-expression tag
Tyr -23-expression tag
Lys -22-expression tag
Asp -21-expression tag
His -20-expression tag
Asp -19-expression tag
Gly -18-expression tag
Asp -17-expression tag
Tyr -16-expression tag
Lys -15-expression tag
Asp -14-expression tag
His -13-expression tag
Asp -12-expression tag
Ile -11-expression tag
Asp -10-expression tag
Tyr -9-expression tag
Lys -8-expression tag
Asp -7-expression tag
Asp -6-expression tag
Asp -5-expression tag
Asp -4-expression tag
Lys -3-expression tag
Ala -2-expression tag
Gly -1-expression tag
Ser 0-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains86
Total formula weight3536360.1
Non-Polymers*Number of molecules245
Total formula weight6780.5
All*Total formula weight3543140.6
*Water molecules are not included.

246905

PDB entries from 2025-12-31

PDB statisticsPDBj update infoContact PDBjnumon