5LKC
Protruding domain of GII.17 norovirus Kawasaki308 in complex with HBGA type A (triglycan)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | Major capsid protein | polymer | 308 | 34315.2 | 2 | UniProt (A0A0S1Z370) Pfam (PF08435) UniProt (by SIFTS) (A0A0E4B1P1) | Norovirus GII | Major viral capsid protein |
| 2 | C, D (C, D) | alpha-L-fucopyranose-(1-2)-[2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)]alpha-D-galactopyranose | branched | 529.5 | 2 | In PDB GlyTouCan (G15611BA) | |||
| 3 | E, F, H, I (A, B) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 4 | Chemie (EDO) | |||
| 4 | G, J (A, B) | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) | |||
| 5 | K, L (A, B) | water | water | 18.0 | 529 | Chemie (HOH) |
Sequence modifications
A, B: 225 - 530 (UniProt: A0A0S1Z370)
| PDB | External Database | Details |
|---|---|---|
| Gly 223 | - | expression tag |
| Ser 224 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 68630.4 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 1059.0 | |
| Non-Polymers* | Number of molecules | 6 |
| Total formula weight | 296.9 | |
| All* | Total formula weight | 69986.3 |
