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5L8D

X-ray structure of NikA from Escherichia coli in complex with Ru(bis(pyrzol-1-yl)acetate scorpionate)(CO)2Cl

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Nickel-binding periplasmic proteinpolymer50256360.72UniProt (P33590)
Pfam (PF00496)
Escherichia coli (strain K12)
2C, D, E, FA, L...
(A, B)
ACETATE IONnon-polymer59.010Chemie (ACT)
3F
(A)
SULFATE IONnon-polymer96.11Chemie (SO4)
4BA, G, GA, H, I...
(B, A)
GLYCEROLnon-polymer92.112Chemie (GOL)
5J
(A)
FE (III) IONnon-polymer55.81Chemie (FE)
6K
(A)
{[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACIDnon-polymer292.21Chemie (EDT)
7Y
(B)
RUTHENIUM IONnon-polymer101.11Chemie (RU)
8CA, Z
(B)
CHLORIDE IONnon-polymer35.52Chemie (CL)
9AA
(B)
bis(pyrzol-1-yl)acetate scorpionatenon-polymer192.21Chemie (6RP)
10DA, EA
(B)
CARBON MONOXIDEnon-polymer28.02Chemie (CMO)
11HA, IA
(A, B)
waterwater18.0666Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight112721.5
Non-Polymers*Number of molecules31
Total formula weight2559.9
All*Total formula weight115281.4
*Water molecules are not included.

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PDB entries from 2025-11-05

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