5L0E
Crystal Structure of Autotaxin and Compound 1
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B | Ectonucleotide pyrophosphatase/phosphodiesterase family member 2 | polymer | 871 | 99954.4 | 2 | UniProt (Q64610) Pfam (PF01033) Pfam (PF01663) Pfam (PF01223) In PDB | Rattus norvegicus (Rat) | E-NPP 2,Autotaxin,Extracellular lysophospholipase D,LysoPLD |
2 | C | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1559.4 | 1 | In PDB GlyTouCan (G37135JQ) | |||
3 | D | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1073.0 | 1 | In PDB GlyTouCan (G47410OF) | |||
4 | A, B | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 2 | Chemie (NAG) | |||
5 | A, B | 6-(3-{2-[(2,3-dihydro-1H-inden-2-yl)amino]-7,8-dihydropyrido[4,3-d]pyrimidin-6(5H)-yl}propanoyl)-1,3-benzoxazol-2(3H)-one | non-polymer | 455.5 | 2 | Chemie (6ZN) | |||
6 | A, B | CHLORIDE ION | non-polymer | 35.5 | 2 | Chemie (CL) | |||
7 | A, B | ZINC ION | non-polymer | 65.4 | 6 | Chemie (ZN) | |||
8 | water | water | 18.0 | 82 | Chemie (HOH) |
Sequence modifications
A, B: 1 - 862 (UniProt: Q64610)
PDB | External Database | Details |
---|---|---|
Thr 591 | Arg 591 | engineered mutation |
Glu 592 | Lys 592 | engineered mutation |
Ala 863 | - | expression tag |
Ala 864 | - | expression tag |
Ala 865 | - | expression tag |
His 866 | - | expression tag |
His 867 | - | expression tag |
His 868 | - | expression tag |
His 869 | - | expression tag |
His 870 | - | expression tag |
His 871 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 199908.7 | |
Branched | Number of molecules | 2 |
Total formula weight | 2632.3 | |
Non-Polymers* | Number of molecules | 12 |
Total formula weight | 1816.8 | |
All* | Total formula weight | 204357.9 |