5KXE
Wisteria floribunda lectin in complex with GalNAc(beta1-4)GlcNAc (LacdiNAc) at pH 4.2
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C, D | Wisteria floribunda agglutinin | polymer | 243 | 26694.4 | 4 | Pfam (PF00139) UniProt (by SIFTS) (A0A1D5B395) In PDB | Wisteria floribunda | |
2 | E | alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 894.8 | 1 | In PDB GlyTouCan (G83878UZ) | |||
3 | F | beta-D-xylopyranose-(1-2)-[alpha-D-mannopyranose-(1-3)][alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1189.1 | 1 | In PDB GlyTouCan (G26295XE) | |||
4 | G, H | alpha-L-fucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 367.3 | 2 | In PDB GlyTouCan (G80587NA) | |||
5 | A, B, C, D | ~{N}-[(2~{S},3~{R},4~{R},5~{R},6~{R})-2-[(2~{R},3~{S},4~{R},5~{R},6~{S})-5-acetamido-2-(hydroxymethyl)-6-(4-nitrophenoxy)-4-oxidanyl-oxan-3-yl]oxy-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-3-yl]ethanamide | non-polymer | 545.5 | 4 | Chemie (6Y2) | |||
6 | A, B, C, D | MANGANESE (II) ION | non-polymer | 54.9 | 4 | Chemie (MN) | |||
7 | A, B, C, D | CALCIUM ION | non-polymer | 40.1 | 4 | Chemie (CA) | |||
8 | D, A, B, C | PHOSPHATE ION | non-polymer | 95.0 | 6 | Chemie (PO4) | |||
9 | B | SULFATE ION | non-polymer | 96.1 | 1 | Chemie (SO4) | |||
10 | water | water | 18.0 | 568 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 106777.8 | |
Branched | Number of molecules | 4 |
Total formula weight | 2818.6 | |
Non-Polymers* | Number of molecules | 19 |
Total formula weight | 3227.9 | |
All* | Total formula weight | 112824.3 |