5KDS
ZmpB metallopeptidase in complex with an O-glycopeptide (a2,6-sialylated core-3 pentapeptide).
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (G) | alpha2,6-sialylated core-3 pentapeptide | polymer | 5 | 401.4 | 1 | Bos taurus (cattle) | BSM fragment | |
| 2 | B (A) | F5/8 type C domain protein | polymer | 530 | 60080.9 | 1 | UniProt (A0A0H2YN38) Pfam (PF13402) | Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 / NCIMB 6125 / NCTC 8237 / Type A) | Metallopeptidase |
| 3 | C (B) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-[N-acetyl-alpha-neuraminic acid-(2-6)]2-acetamido-2-deoxy-alpha-D-galactopyranose | branched | 715.7 | 1 | In PDB GlyTouCan (G63334FZ) | |||
| 4 | D (A) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
| 5 | E (A) | L(+)-TARTARIC ACID | non-polymer | 150.1 | 1 | Chemie (TLA) | |||
| 6 | F (A) | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID | non-polymer | 238.3 | 1 | Chemie (EPE) | |||
| 7 | G, H, I, J, K (A) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 5 | Chemie (EDO) | |||
| 8 | L, M (G, A) | water | water | 18.0 | 794 | Chemie (HOH) |
Sequence modifications
A: 497 - 1003 (UniProt: A0A0H2YN38)
| PDB | External Database | Details |
|---|---|---|
| Met 474 | - | initiating methionine |
| Gly 475 | - | expression tag |
| Ser 476 | - | expression tag |
| Ser 477 | - | expression tag |
| His 478 | - | expression tag |
| His 479 | - | expression tag |
| His 480 | - | expression tag |
| His 481 | - | expression tag |
| His 482 | - | expression tag |
| His 483 | - | expression tag |
| Ser 484 | - | expression tag |
| Ser 485 | - | expression tag |
| Gly 486 | - | expression tag |
| Leu 487 | - | expression tag |
| Val 488 | - | expression tag |
| Pro 489 | - | expression tag |
| Arg 490 | - | expression tag |
| Gly 491 | - | expression tag |
| Ser 492 | - | expression tag |
| His 493 | - | expression tag |
| Met 494 | - | expression tag |
| Ala 495 | - | expression tag |
| Ser 496 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 60482.3 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 715.7 | |
| Non-Polymers* | Number of molecules | 8 |
| Total formula weight | 764.1 | |
| All* | Total formula weight | 61962.1 |
