5KDJ

ZmpB metallopeptidase from Clostridium perfringens

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, B (B, A)	F5/8 type C domain protein	polymer	674	76227.8	2	UniProt (A0A0H2YN38) Pfam (PF13402) Pfam (PF16403)	Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 / NCIMB 6125 / NCTC 8237 / Type A)	Metallopeptidase
2	C, F (B, A)	GLYCEROL	non-polymer		92.1	2	Chemie (GOL)
3	D (B)	SODIUM ION	non-polymer		23.0	1	Chemie (NA)
4	E, G (B, A)	ZINC ION	non-polymer		65.4	2	Chemie (ZN)
5	H, I (B, A)	water	water		18.0	772	Chemie (HOH)

Sequence modifications

B, A: 434 - 1084 (UniProt: A0A0H2YN38)

PDB	External Database	Details
Met 411	-	initiating methionine
Gly 412	-	expression tag
Ser 413	-	expression tag
Ser 414	-	expression tag
His 415	-	expression tag
His 416	-	expression tag
His 417	-	expression tag
His 418	-	expression tag
His 419	-	expression tag
His 420	-	expression tag
Ser 421	-	expression tag
Ser 422	-	expression tag
Gly 423	-	expression tag
Leu 424	-	expression tag
Val 425	-	expression tag
Pro 426	-	expression tag
Arg 427	-	expression tag
Gly 428	-	expression tag
Ser 429	-	expression tag
His 430	-	expression tag
Met 431	-	expression tag
Ala 432	-	expression tag
Ser 433	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	2
	Total formula weight	152455.6
Non-Polymers*	Number of molecules	5
	Total formula weight	338.0
All*	Total formula weight	152793.6

*Water molecules are not included.