5JWD
Crystal structure of H-2Db in complex with the LCMV-derived GP392-401 peptide
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | H-2 class I histocompatibility antigen, D-B alpha chain | polymer | 274 | 31861.5 | 1 | UniProt (P01899) Pfam (PF00129) Pfam (PF07654) | Mus musculus (Mouse) | H-2D(B) |
| 2 | B (B) | Beta-2-microglobulin | polymer | 99 | 11704.4 | 1 | UniProt (P01887) Pfam (PF07654) | Mus musculus (Mouse) | |
| 3 | C (C) | Pre-glycoprotein polyprotein GP complex | polymer | 9 | 1052.2 | 1 | UniProt (P09991) | Lymphocytic choriomeningitis virus | |
| 4 | D, E, F (A) | GLYCEROL | non-polymer | 92.1 | 3 | Chemie (GOL) | |||
| 5 | G (B) | SULFATE ION | non-polymer | 96.1 | 1 | Chemie (SO4) | |||
| 6 | H, I, J (A, B, C) | water | water | 18.0 | 49 | Chemie (HOH) |
Sequence modifications
B: 1 - 99 (UniProt: P01887)
| PDB | External Database | Details |
|---|---|---|
| Asp 85 | Ala 105 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 44618.0 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 372.3 | |
| All* | Total formula weight | 44990.4 |
