5JUT
Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | 18S ribosomal RNA | polymer | 1798 | 579126.6 | 1 | GenBank (874346701) | Saccharomyces cerevisiae (Baker's yeast) | |
2 | B | 25S ribosomal RNA | polymer | 3396 | 1097493.9 | 1 | GenBank (834774822) | Saccharomyces cerevisiae (Baker's yeast) | |
3 | C | 5.8S ribosomal RNA | polymer | 158 | 50682.9 | 1 | GenBank (1043567390) | Saccharomyces cerevisiae (Baker's yeast) | |
4 | D | 5S ribosomal RNA | polymer | 121 | 38951.1 | 1 | GenBank (1039022949) | Saccharomyces cerevisiae (Baker's yeast) | |
5 | E | uL1 (yeast L1) | polymer | 217 | 24524.8 | 1 | UniProt (P0CX43) Pfam (PF00687) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
6 | F | uL2 (yeast L2) | polymer | 254 | 27463.6 | 1 | UniProt (P0CX45) Pfam (PF00181) Pfam (PF03947) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
7 | G | uL3 (yeast L3) | polymer | 387 | 43850.8 | 1 | UniProt (P14126) Pfam (PF00297) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
8 | H | uL4 (yeast L4) | polymer | 362 | 39159.1 | 1 | UniProt (P10664) Pfam (PF00573) Pfam (PF14374) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
9 | I | uL18 (yeast L5) | polymer | 297 | 33764.8 | 1 | UniProt (P26321) Pfam (PF17144) Pfam (PF14204) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
10 | J | eL6 (yeast L6) | polymer | 176 | 20000.6 | 1 | UniProt (Q02326) Pfam (PF01159) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
11 | K | uL30 (yeast L7) | polymer | 244 | 27686.3 | 1 | UniProt (P05737) Pfam (PF08079) Pfam (PF00327) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
12 | L | eL8 (yeast L8) | polymer | 256 | 28175.8 | 1 | UniProt (P17076) Pfam (PF01248) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
13 | M | uL6 (yeast L9) | polymer | 191 | 21605.1 | 1 | UniProt (P05738) Pfam (PF00347) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
14 | N | uL16 (yeast L10) | polymer | 221 | 25410.5 | 1 | UniProt (P41805) Pfam (PF00252) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
15 | O | uL5 (yeast L11) | polymer | 174 | 19755.7 | 1 | UniProt (P0C0W9) Pfam (PF00281) Pfam (PF00673) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
16 | P | uL11 (yeast L12) | polymer | 165 | 17850.6 | 1 | UniProt (P0CX53) Pfam (PF03946) Pfam (PF00298) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
17 | Q | eL13 (yeast L13) | polymer | 199 | 22604.2 | 1 | UniProt (Q12690) Pfam (PF01294) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
18 | R | eL14 (yeast L14) | polymer | 138 | 15195.1 | 1 | UniProt (P36105) Pfam (PF00467) Pfam (PF01929) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
19 | S | eL15 (yeast L15) | polymer | 204 | 24482.4 | 1 | UniProt (P05748) Pfam (PF00827) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
20 | T | uL13 (yeast L16) | polymer | 199 | 22247.2 | 1 | UniProt (P26784) Pfam (PF00572) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
21 | U | uL22 (yeast L17) | polymer | 184 | 20589.5 | 1 | UniProt (P05740) Pfam (PF00237) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
22 | V | eL18 (yeast L18) | polymer | 186 | 20609.3 | 1 | UniProt (P0CX49) Pfam (PF17135) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
23 | W | eL19 (yeast L19) | polymer | 189 | 21762.3 | 1 | UniProt (P0CX82) Pfam (PF01280) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
24 | X | eL20 (yeast L20) | polymer | 172 | 20478.9 | 1 | UniProt (P0CX23) Pfam (PF01775) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
25 | Y | eL21 (yeast L21) | polymer | 160 | 18279.3 | 1 | UniProt (Q02753) Pfam (PF01157) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
26 | Z | eL22 (yeast L22) | polymer | 121 | 13711.4 | 1 | UniProt (P05749) Pfam (PF01776) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
27 | AA | uL14 (yeast L23) | polymer | 137 | 14494.0 | 1 | UniProt (P0CX41) Pfam (PF00238) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
28 | BA | eL24 (yeast L24) | polymer | 155 | 17661.7 | 1 | UniProt (P04449) Pfam (PF01246) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
29 | CA | uL23 (yeast L25) | polymer | 142 | 15787.6 | 1 | UniProt (P04456) Pfam (PF03939) Pfam (PF00276) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
30 | DA | uL24 (yeast L26) | polymer | 127 | 14265.8 | 1 | UniProt (P05743) Pfam (PF16906) Pfam (PF00467) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
31 | EA | eL27 (yeast L27) | polymer | 136 | 15568.4 | 1 | UniProt (P0C2H6) Pfam (PF01777) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
32 | FA | uL15 (yeast L28) | polymer | 149 | 16761.7 | 1 | UniProt (P02406) Pfam (PF00828) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
33 | GA | eL29 (yeast L29) | polymer | 59 | 6691.9 | 1 | UniProt (P05747) Pfam (PF01779) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
34 | HA | eL30 (yeast L30) | polymer | 105 | 11430.4 | 1 | UniProt (P14120) Pfam (PF01248) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
35 | IA | eL31 (yeast L31) | polymer | 113 | 12980.2 | 1 | UniProt (P0C2H8) Pfam (PF01198) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
36 | JA | eL32 (yeast L32) | polymer | 130 | 14809.4 | 1 | UniProt (P38061) Pfam (PF01655) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
37 | KA | eL33 (yeast L33) | polymer | 107 | 12177.1 | 1 | UniProt (P05744) Pfam (PF01247) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
38 | LA | eL34 (yeast L34) | polymer | 121 | 13673.2 | 1 | UniProt (P87262) Pfam (PF01199) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
39 | MA | uL29 (yeast L35) | polymer | 120 | 13942.6 | 1 | UniProt (P0CX84) Pfam (PF00831) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
40 | NA | eL36 (yeast L36) | polymer | 100 | 11151.3 | 1 | UniProt (P05745) Pfam (PF01158) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
41 | OA | eL37 (yeast L37) | polymer | 88 | 9877.4 | 1 | UniProt (P49166) Pfam (PF01907) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
42 | PA | eL38 (yeast L38) | polymer | 78 | 8845.6 | 1 | UniProt (P49167) Pfam (PF01781) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
43 | QA | eL39 (yeast L39) | polymer | 51 | 6358.6 | 1 | UniProt (P04650) Pfam (PF00832) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
44 | RA | eL40 (yeast L40) | polymer | 128 | 14583.1 | 1 | UniProt (P0CH08) Pfam (PF00240) Pfam (PF01020) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
45 | SA | eL41 (yeast L41) | polymer | 25 | 3354.2 | 1 | UniProt (P0CX86) Pfam (PF05162) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
46 | TA | eL42 (yeast L42) | polymer | 106 | 12246.7 | 1 | UniProt (P0CX27) Pfam (PF00935) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
47 | UA | eL43 (yeast L43) | polymer | 92 | 10113.0 | 1 | UniProt (P0CX25) Pfam (PF01780) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
48 | VA | uL10 (yeast P0) | polymer | 312 | 33749.1 | 1 | UniProt (P05317) Pfam (PF00466) Pfam (PF17777) Pfam (PF00428) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
49 | WA | RACK1 (yeast Asc1) | polymer | 319 | 34841.2 | 1 | UniProt (P38011) Pfam (PF00400) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
50 | XA | uS2 (yeast S0) | polymer | 252 | 28051.3 | 1 | UniProt (B3LI22) Pfam (PF00318) UniProt (by SIFTS) (P32905) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
51 | YA | eS1 (yeast S1) | polymer | 255 | 28798.5 | 1 | UniProt (B3RHV0) Pfam (PF01015) UniProt (by SIFTS) (P33442) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
52 | ZA | uS5 (yeast S2) | polymer | 254 | 27490.8 | 1 | UniProt (P25443) Pfam (PF00333) Pfam (PF03719) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
53 | AB | uS3 (yeast S3) | polymer | 240 | 26542.8 | 1 | UniProt (P05750) Pfam (PF07650) Pfam (PF00189) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
54 | BB | eS4 (yeast S4) | polymer | 261 | 29469.3 | 1 | UniProt (P0CX35) Pfam (PF16121) Pfam (PF08071) Pfam (PF01479) Pfam (PF00900) Pfam (PF00467) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
55 | CB | uS7 (yeast S5) | polymer | 225 | 25072.6 | 1 | UniProt (P26783) Pfam (PF00177) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
56 | DB | eS6 (yeast S6) | polymer | 236 | 27054.5 | 1 | UniProt (P0CX37) Pfam (PF01092) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
57 | EB | eS7 (yeast S7) | polymer | 190 | 21658.2 | 1 | UniProt (P26786) Pfam (PF01251) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
58 | FB | eS8 (yeast S8) | polymer | 200 | 22537.8 | 1 | UniProt (P0CX39) Pfam (PF01201) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
59 | GB | uS4 (yeast S9) | polymer | 197 | 22487.9 | 1 | UniProt (O13516) Pfam (PF00163) Pfam (PF01479) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
60 | HB | eS10 (yeast S10) | polymer | 105 | 12757.4 | 1 | UniProt (Q08745) Pfam (PF03501) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
61 | IB | uS17 (yeast S11) | polymer | 156 | 17785.9 | 1 | UniProt (P0CX47) Pfam (PF16205) Pfam (PF00366) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
62 | JB | eS12 (yeast S12) | polymer | 143 | 15488.6 | 1 | UniProt (P48589) Pfam (PF01248) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
63 | KB | uS15 (yeast S13) | polymer | 151 | 17059.9 | 1 | UniProt (P05756) Pfam (PF08069) Pfam (PF00312) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
64 | LB | uS11 (yeast S14) | polymer | 137 | 14562.7 | 1 | UniProt (P06367) Pfam (PF00411) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
65 | MB | uS19 (yeast S15) | polymer | 142 | 16031.9 | 1 | UniProt (Q01855) Pfam (PF00203) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
66 | NB | uS9 (yeast S16) | polymer | 143 | 15877.5 | 1 | UniProt (P0CX51) Pfam (PF00380) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
67 | OB | eS17 (yeast S17) | polymer | 136 | 15820.4 | 1 | UniProt (P02407) Pfam (PF00833) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
68 | PB | uS13 (yeast S18) | polymer | 146 | 17071.6 | 1 | UniProt (P0CX55) Pfam (PF00416) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
69 | QB | eS19 (yeast S19) | polymer | 144 | 15942.1 | 1 | UniProt (P07280) Pfam (PF01090) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
70 | RB | uS10 (yeast S20) | polymer | 121 | 13929.0 | 1 | UniProt (P38701) Pfam (PF00338) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
71 | SB | eS21 (yeast S21) | polymer | 87 | 9758.8 | 1 | UniProt (P0C0V8) Pfam (PF01249) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
72 | TB | uS8 (yeast S22) | polymer | 130 | 14650.1 | 1 | UniProt (P0C0W1) Pfam (PF00410) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
73 | UB | uS12 (yeast S23) | polymer | 145 | 16073.9 | 1 | UniProt (P0CX29) Pfam (PF00164) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
74 | VB | eS24 (yeast S24) | polymer | 135 | 15362.8 | 1 | UniProt (P0CX31) Pfam (PF01282) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
75 | WB | eS25 (yeast S25) | polymer | 108 | 12067.3 | 1 | UniProt (Q3E792) Pfam (PF03297) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
76 | XB | eS26 (yeast S26) | polymer | 119 | 13538.9 | 1 | UniProt (P39938) Pfam (PF01283) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
77 | YB | eS27 (yeast S27) | polymer | 82 | 8893.4 | 1 | UniProt (P35997) Pfam (PF01667) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
78 | ZB | eS28 (yeast S28) | polymer | 67 | 7605.8 | 1 | UniProt (Q3E7X9) Pfam (PF01200) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
79 | AC | uS14 (yeast S29) | polymer | 56 | 6675.7 | 1 | UniProt (P41057) Pfam (PF00253) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
80 | BC | eS30 (yeast S30) | polymer | 63 | 7137.5 | 1 | UniProt (P0CX33) Pfam (PF04758) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
81 | CC | eS31 (yeast S31) | polymer | 152 | 17254.2 | 1 | UniProt (P05759) Pfam (PF00240) Pfam (PF01599) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
82 | DC | yeast eEF2 | polymer | 842 | 93549.3 | 1 | UniProt (P32324) Pfam (PF00009) Pfam (PF03144) Pfam (PF14492) Pfam (PF03764) Pfam (PF00679) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
83 | EC | IRES | polymer | 201 | 64644.3 | 1 | GenBank (14701764) | Taura syndrome virus | |
84 | DC | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 1 | Chemie (GDP) | |||
85 | DC | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
86 | DC | [1R-(1.ALPHA.,3A.BETA.,4.BETA.,4A.BETA.,7.BETA.,7A.ALPHA.,8A.BETA.)]8A-[(6-DEOXY-4-O-METHYL-BETA-D-ALTROPYRANOSYLOXY)METHYL]-4-FORMYL-4,4A,5,6,7,7A,8,8A-OCTAHYDRO-7-METHYL-3-(1-METHYLETHYL)-1,4-METHANO-S-INDACENE-3A(1H)-CARBOXYLIC ACID | non-polymer | 494.6 | 1 | Chemie (SO1) |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 83 |
Total formula weight | 3339528.6 | |
Non-Polymers* | Number of molecules | 3 |
Total formula weight | 962.1 | |
All* | Total formula weight | 3340490.8 |