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5JD8

Crystal structure of the serine endoprotease from Yersinia pestis

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Periplasmic serine peptidase DegSpolymer33435354.81UniProt (A0A0B6NK33)
Pfam (PF13365)
Pfam (PF13180)
UniProt (by SIFTS) (A0A5P8YL96)
Yersinia pestis CO92
2B
(A)
3-CYCLOHEXYL-1-PROPYLSULFONIC ACIDnon-polymer221.31Chemie (CXS)
3C
(A)
DI(HYDROXYETHYL)ETHERnon-polymer106.11Chemie (PEG)
4D
(A)
SULFATE IONnon-polymer96.11Chemie (SO4)
5E
(A)
waterwater18.0154Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight35354.8
Non-Polymers*Number of molecules3
Total formula weight423.5
All*Total formula weight35778.3
*Water molecules are not included.

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PDB entries from 2025-07-16

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