5J7Z
Crystal structure of endoglycoceramidase I from Rhodococ-cus equi in complex with GM1
Replaces: 5DVGEntity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B | Putative secreted endoglycosylceramidase | polymer | 500 | 53869.9 | 2 | UniProt (E4W8N9) In PDB | Rhodococcus equi 103S | |
2 | C | beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)-[N-acetyl-alpha-neuraminic acid-(2-3)]beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | branched | 998.9 | 1 | In PDB GlyTouCan (G48558GR) | |||
3 | A, B | SODIUM ION | non-polymer | 23.0 | 2 | Chemie (NA) | |||
4 | A | N-((E,2S,3R)-1,3-DIHYDROXYOCTADEC-4-EN-2-YL)STEARAMIDE | non-polymer | 566.0 | 1 | Chemie (18C) | |||
5 | water | water | 18.0 | 380 | Chemie (HOH) |
Sequence modifications
A, B: 27 - 492 (UniProt: E4W8N9)
PDB | External Database | Details |
---|---|---|
Met -7 | - | expression tag |
Gly -6 | - | expression tag |
Ser -5 | - | expression tag |
Ser -4 | - | expression tag |
His -3 | - | expression tag |
His -2 | - | expression tag |
His -1 | - | expression tag |
His 0 | - | expression tag |
His 1 | - | expression tag |
His 2 | - | expression tag |
Ser 3 | - | expression tag |
Ser 4 | - | expression tag |
Gly 5 | - | expression tag |
Leu 6 | - | expression tag |
Val 7 | - | expression tag |
Pro 8 | - | expression tag |
Arg 9 | - | expression tag |
Gly 10 | - | expression tag |
Ser 11 | - | expression tag |
His 12 | - | expression tag |
Met 13 | - | expression tag |
Ala 14 | - | expression tag |
Ser 15 | - | expression tag |
Met 16 | - | expression tag |
Thr 17 | - | expression tag |
Gly 18 | - | expression tag |
Gly 19 | - | expression tag |
Gln 20 | - | expression tag |
Gln 21 | - | expression tag |
Met 22 | - | expression tag |
Gly 23 | - | expression tag |
Arg 24 | - | expression tag |
Gly 25 | - | expression tag |
Ser 26 | - | expression tag |
Ser 339 | Glu 339 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 107739.7 | |
Branched | Number of molecules | 1 |
Total formula weight | 998.9 | |
Non-Polymers* | Number of molecules | 3 |
Total formula weight | 611.9 | |
All* | Total formula weight | 109350.5 |