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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

5J4D

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, FB16S ribosomal RNApolymer1507489561.22GenBank (AE017221.1)Thermus thermophilus HB27
2B, GB25S ribosomal RNApolymer2880936785.62GenBank (46197919)Thermus thermophilus HB27
3C, HB5S ribosomal RNApolymer12038882.22GenBank (46197919)Thermus thermophilus HB27
4D, IA, IB, NCtRNApolymer7724846.94GenBank (CP010445.1)Escherichia coli K-12
5E, JB50S ribosomal protein L2polymer27530401.42UniProt (Q72I07)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
6F, KB50S ribosomal protein L3polymer20622450.22UniProt (Q72I04)
Pfam (PF00297)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
7G, LB50S ribosomal protein L4polymer20522744.32UniProt (Q72I05)
Pfam (PF00573)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
8H, MB50S ribosomal protein L5polymer18221075.62UniProt (Q72I16)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
9I, NB50S ribosomal protein L6polymer18019568.92UniProt (Q72I19)
Pfam (PF00347)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
10J, OB50S ribosomal protein L9polymer14816436.22UniProt (Q72GV5)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
11K, PB50S ribosomal protein L13polymer14015927.92UniProt (Q72IN1)
Pfam (PF00572)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
12L, QB50S ribosomal protein L14polymer12213309.62UniProt (Q72I14)
Pfam (PF00238)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
13M, RB50S ribosomal protein L15polymer15016319.12UniProt (Q72I23)
Pfam (PF00828)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
14N, SB50S ribosomal protein L16polymer14115977.92UniProt (Q72I11)
Pfam (PF00252)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
15O, TB50S ribosomal protein L17polymer11813750.12UniProt (Q72I33)
Pfam (PF01196)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
16P, UB50S ribosomal protein L18polymer11212639.82UniProt (Q72I20)
Pfam (PF00861)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
17Q, VB50S ribosomal protein L19polymer14617217.92UniProt (Q72JU9)
Pfam (PF01245)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
18R, WB50S ribosomal protein L20polymer11813779.32UniProt (Q72L76)
Pfam (PF00453)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
19S, XB50S ribosomal protein L21polymer10111069.22UniProt (Q72HR2)
Pfam (PF00829)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
20T, YB50S ribosomal protein L22polymer11312808.12UniProt (Q72I09)
Pfam (PF00237)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
21U, ZB50S ribosomal protein L23polymer9610759.82UniProt (Q72I06)
Pfam (PF00276)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
22V, AC50S ribosomal protein L24polymer11012085.62UniProt (Q72I15)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
23W, BC50S ribosomal protein L25polymer20623238.62UniProt (Q72IA7)
Pfam (PF01386)
Pfam (PF14693)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)General stress protein CTC
24X, CC50S ribosomal protein L27polymer859529.12UniProt (P60493)
Pfam (PF01016)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
25Y, DC50S ribosomal protein L28polymer9811032.22UniProt (Q72G84)
Pfam (PF00830)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
26Z, EC50S ribosomal protein L29polymer728670.32UniProt (Q72I12)
Pfam (PF00831)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
27AA, FC50S ribosomal protein L30polymer606799.12UniProt (Q72I22)
Pfam (PF00327)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
28BA, GC50S ribosomal protein L31polymer718300.52UniProt (Q72JR0)
Pfam (PF01197)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
29CA, HC50S ribosomal protein L32polymer606734.12UniProt (P62652)
Pfam (PF01783)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
30DA, IC50S ribosomal protein L33polymer546632.92UniProt (Q72GW3)
Pfam (PF00471)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
31EA, JC50S ribosomal protein L34polymer496132.42UniProt (P80340)
Pfam (PF00468)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
32FA, KC50S ribosomal protein L35polymer657506.22UniProt (Q72L77)
Pfam (PF01632)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
33GA, LC50S ribosomal protein L36polymer374435.42UniProt (Q72I28)
Pfam (PF00444)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
34HA, MCmRNApolymer278862.52synthetic construct
35JA, OCPeptide chain release factor 1polymer36841644.42UniProt (P0A7I0)
Pfam (PF03462)
Pfam (PF00472)
In PDB		Escherichia coli (strain K12)RF-1
36KA, PC30S ribosomal protein S2polymer25629317.72UniProt (P62662)
Pfam (PF00318)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
37LA, QC30S ribosomal protein S3polymer23926751.12UniProt (P62663)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
38MA, RC30S ribosomal protein S4polymer20924373.42UniProt (P62664)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
39NA, SC30S ribosomal protein S5polymer16217583.42UniProt (P62665)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
40OA, TC30S ribosomal protein S6polymer10111988.82UniProt (P62666)
Pfam (PF01250)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
41PA, UC30S ribosomal protein S7polymer15618051.02UniProt (P62667)
Pfam (PF00177)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
42QA, VC30S ribosomal protein S8polymer13815868.62UniProt (P62668)
Pfam (PF00410)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
43RA, WC30S ribosomal protein S9polymer12814429.72UniProt (P62669)
Pfam (PF00380)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
44SA, XC30S ribosomal protein S10polymer10511955.02UniProt (P62653)
Pfam (PF00338)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
45TA, YC30S ribosomal protein S11polymer12913737.92UniProt (P62654)
Pfam (PF00411)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
46UA, ZC30S ribosomal protein S12polymer13214683.52UniProt (P61941)
Pfam (PF00164)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
47VA, AD30S ribosomal protein S13polymer12614338.92UniProt (P62655)
Pfam (PF00416)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
48WA, BD30S ribosomal protein S14 type Zpolymer617158.72UniProt (P62656)
Pfam (PF00253)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
49XA, CD30S ribosomal protein S15polymer8910578.42UniProt (P62657)
Pfam (PF00312)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
50YA, DD30S ribosomal protein S16polymer8810410.02UniProt (P62238)
Pfam (PF00886)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
51ZA, ED30S ribosomal protein S17polymer10512324.72UniProt (P62658)
Pfam (PF00366)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
52AB, FD30S ribosomal protein S18polymer8810258.32UniProt (P62659)
Pfam (PF01084)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
53BB, GD30S ribosomal protein S19polymer9310605.52UniProt (P62660)
Pfam (PF00203)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
54CB, HD30S ribosomal protein S20polymer10611722.12UniProt (P62661)
Pfam (PF01649)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
55DB, ID30S ribosomal protein Thxpolymer273350.02UniProt (P62613)
Pfam (PF17070)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
56B, C, GB, F, I...MAGNESIUM IONnon-polymer24.32893Chemie (MG)
57LC, GA, V, BA, GC...ZINC IONnon-polymer65.410Chemie (ZN)
Sequence modifications
JA, OC: 1 - 360 (UniProt: P0A7I0)
PDBExternal DatabaseDetails
Leu 361-expression tag
Glu 362-expression tag
His 363-expression tag
His 364-expression tag
His 365-expression tag
His 366-expression tag
His 367-expression tag
His 368-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains112
Total formula weight4504495.8
Non-Polymers*Number of molecules2903
Total formula weight70968.5
All*Total formula weight4575464.2
*Water molecules are not included.

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PDB entries from 2024-04-24

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