5IT9
Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Ribosomal protein uS2 | polymer | 206 | 22882.2 | 1 | UniProt (Q6CN12) Pfam (PF00318) | Kluyveromyces lactis | 40S ribosomal protein S0 |
| 2 | B (B) | Ribosomal protein eS1 | polymer | 214 | 24488.3 | 1 | UniProt (Q6CWD0) Pfam (PF01015) | Kluyveromyces lactis | 40S ribosomal protein S1 |
| 3 | C (C) | Ribosomal protein uS5 | polymer | 217 | 23162.9 | 1 | UniProt (Q6CKL3) Pfam (PF00333) Pfam (PF03719) | Kluyveromyces lactis | KLLA0F09812p |
| 4 | D (D) | Ribosomal protein uS3 | polymer | 223 | 24830.9 | 1 | UniProt (Q6CRK7) Pfam (PF07650) Pfam (PF00189) | Kluyveromyces lactis | KLLA0D08305p |
| 5 | E (E) | Ribosomal protein eS4 | polymer | 260 | 29486.3 | 1 | UniProt (Q6CWJ2) Pfam (PF00900) Pfam (PF00467) Pfam (PF16121) Pfam (PF08071) Pfam (PF01479) | Kluyveromyces lactis | 40S ribosomal protein S4 |
| 6 | F (F) | Ribosomal protein uS7 | polymer | 206 | 22912.4 | 1 | UniProt (Q6CRA3) Pfam (PF00177) | Kluyveromyces lactis | KLLA0D10659p |
| 7 | G (G) | Ribosomal protein eS6 | polymer | 226 | 25811.0 | 1 | UniProt (Q6CM04) Pfam (PF01092) | Kluyveromyces lactis | 40S ribosomal protein S6 |
| 8 | H (H) | Ribosomal protein eS7 | polymer | 184 | 21033.6 | 1 | UniProt (Q6CTD6) Pfam (PF01251) | Kluyveromyces lactis | KLLA0C13519p |
| 9 | I (I) | Ribosomal protein eS8 | polymer | 200 | 22511.5 | 1 | UniProt (Q6CMG3) Pfam (PF01201) | Kluyveromyces lactis | 40S ribosomal protein S8 |
| 10 | J (J) | Ribosomal protein uS4 | polymer | 182 | 20882.3 | 1 | UniProt (Q6CM18) Pfam (PF00163) Pfam (PF01479) | Kluyveromyces lactis | KLLA0E23673p |
| 11 | K (K) | Ribosomal protein eS10 | polymer | 96 | 11423.1 | 1 | UniProt (Q6CVZ5) Pfam (PF03501) | Kluyveromyces lactis | KLLA0B08173p |
| 12 | L (L) | Ribosomal protein uS17 | polymer | 155 | 17712.7 | 1 | UniProt (Q6CX80) Pfam (PF16205) Pfam (PF00366) | Kluyveromyces lactis | KLLA0A10483p |
| 13 | M (M) | Ribosomal protein eS12 | polymer | 122 | 13124.9 | 1 | UniProt (Q6CLU4) Pfam (PF01248) | Kluyveromyces lactis | 40S ribosomal protein S12 |
| 14 | N (N) | Ribosomal protein uS15 | polymer | 150 | 16858.7 | 1 | UniProt (Q6CJK0) Pfam (PF08069) Pfam (PF00312) | Kluyveromyces lactis | KLLA0F18040p |
| 15 | O (O) | Ribosomal protein uS14 | polymer | 127 | 13458.4 | 1 | UniProt (P27069) Pfam (PF00411) | Kluyveromyces lactis | 40S ribosomal protein S14, RP59 |
| 16 | P (P) | Ribosomal protein uS19 | polymer | 123 | 14055.6 | 1 | UniProt (Q6CKV4) Pfam (PF00203) | Kluyveromyces lactis | KLLA0F07843p |
| 17 | Q (Q) | Ribosomal protein uS9 | polymer | 141 | 15656.3 | 1 | UniProt (Q875N2) Pfam (PF00380) | Kluyveromyces lactis | 40S ribosomal protein S16 |
| 18 | R (R) | Ribosomal protein eS17 | polymer | 129 | 14729.0 | 1 | UniProt (Q6CWU3) Pfam (PF00833) | Kluyveromyces lactis | KLLA0B01474p |
| 19 | S (S) | Ribosomal protein uS13 | polymer | 145 | 16953.4 | 1 | UniProt (Q6CWT9) Pfam (PF00416) | Kluyveromyces lactis | KLLA0B01562p |
| 20 | T (T) | Ribosomal protein eS19 | polymer | 143 | 15747.8 | 1 | UniProt (Q6CXM0) Pfam (PF01090) | Kluyveromyces lactis | KLLA0A07194p |
| 21 | U (U) | Ribosomal protein uS10 | polymer | 106 | 12032.1 | 1 | UniProt (Q6CIM1) Pfam (PF00338) | Kluyveromyces lactis | KLLA0F25542p |
| 22 | V (V) | Ribosomal protein eS21 | polymer | 87 | 9797.9 | 1 | UniProt (Q6CXT6) Pfam (PF01249) | Kluyveromyces lactis | 40S ribosomal protein S21 |
| 23 | W (W) | Ribosomal protein uS8 | polymer | 129 | 14513.8 | 1 | UniProt (Q6CW21) Pfam (PF00410) | Kluyveromyces lactis | 40S ribosomal protein S22 |
| 24 | X (X) | Ribosomal protein uS21 | polymer | 145 | 16047.9 | 1 | UniProt (Q875M3) Pfam (PF00164) | Kluyveromyces lactis | RPS23 |
| 25 | Y (Y) | Ribosomal protein eS24 | polymer | 134 | 15063.4 | 1 | UniProt (Q6CU44) Pfam (PF01282) | Kluyveromyces lactis | 40S ribosomal protein S24 |
| 26 | Z (Z) | Ribosomal protein eS25 | polymer | 70 | 7939.2 | 1 | UniProt (Q6CW78) Pfam (PF03297) | Kluyveromyces lactis | KLLA0B06182p |
| 27 | AA (a) | Ribosomal protein eS26 | polymer | 100 | 11454.6 | 1 | UniProt (Q6CS01) Pfam (PF01283) | Kluyveromyces lactis | KLLA0D05115p |
| 28 | BA (b) | Ribosomal protein eS27 | polymer | 82 | 8884.4 | 1 | UniProt (Q6CNL2) Pfam (PF01667) | Kluyveromyces lactis | 40S ribosomal protein S27 |
| 29 | CA (c) | Ribosomal protein eS28 | polymer | 63 | 7073.3 | 1 | UniProt (P33285) Pfam (PF01200) | Kluyveromyces lactis | 40S ribosomal protein S28, S33 |
| 30 | DA (d) | Ribosomal protein eS29 | polymer | 53 | 6322.1 | 1 | UniProt (Q6CPG3) Pfam (PF00253) | Kluyveromyces lactis | 40S ribosomal protein S29 |
| 31 | EA (e) | Ribosomal protein eS30 | polymer | 55 | 6329.4 | 1 | UniProt (Q6CUH5) Pfam (PF04758) | Kluyveromyces lactis | KLLA0C04809p |
| 32 | FA (f) | Ribosomal protein eS31 | polymer | 69 | 7958.4 | 1 | UniProt (P69061) Pfam (PF01599) | Kluyveromyces lactis | Ubiquitin-40S ribosomal protein S27a |
| 33 | GA (g) | Ribosomal protein RACK1 | polymer | 324 | 35612.7 | 1 | UniProt (Q6CNI7) Pfam (PF00400) | Kluyveromyces lactis | KLLA0E12277p |
| 34 | HA (2) | 18S ribosomal RNA | polymer | 1780 | 573508.9 | 1 | Kluyveromyces lactis | ||
| 35 | IA (i) | Cricket paralysis virus IRES RNA | polymer | 192 | 61462.2 | 1 | GenBank (8895506) | Cricket paralysis virus | |
| 36 | AB, AC, AD, BB, BC... (2, G, N, T, X) | MAGNESIUM ION | non-polymer | 24.3 | 80 | Chemie (MG) | |||
| 37 | NA, OA, PA (a, b, f) | ZINC ION | non-polymer | 65.4 | 3 | Chemie (ZN) |
Sequence modifications
i: 6030 - 6221 (GenBank: 8895506)
| PDB | External Database | Details |
|---|---|---|
| C 6176 | U 6176 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 35 |
| Total formula weight | 1181721.7 | |
| Non-Polymers* | Number of molecules | 83 |
| Total formula weight | 2140.6 | |
| All* | Total formula weight | 1183862.3 |
