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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

5IT9

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1ARibosomal protein uS2polymer20622882.21UniProt (Q6CN12)
Pfam (PF00318)
In PDB		Kluyveromyces lactis40S ribosomal protein S0
2BRibosomal protein eS1polymer21424488.31UniProt (Q6CWD0)
Pfam (PF01015)
In PDB		Kluyveromyces lactis40S ribosomal protein S1
3CRibosomal protein uS5polymer21723162.91UniProt (Q6CKL3)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Kluyveromyces lactisKLLA0F09812p
4DRibosomal protein uS3polymer22324830.91UniProt (Q6CRK7)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Kluyveromyces lactisKLLA0D08305p
5ERibosomal protein eS4polymer26029486.31UniProt (Q6CWJ2)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
Pfam (PF08071)
Pfam (PF01479)
In PDB		Kluyveromyces lactis40S ribosomal protein S4
6FRibosomal protein uS7polymer20622912.41UniProt (Q6CRA3)
Pfam (PF00177)
In PDB		Kluyveromyces lactisKLLA0D10659p
7GRibosomal protein eS6polymer22625811.01UniProt (Q6CM04)
Pfam (PF01092)
In PDB		Kluyveromyces lactis40S ribosomal protein S6
8HRibosomal protein eS7polymer18421033.61UniProt (Q6CTD6)
Pfam (PF01251)
In PDB		Kluyveromyces lactisKLLA0C13519p
9IRibosomal protein eS8polymer20022511.51UniProt (Q6CMG3)
Pfam (PF01201)
In PDB		Kluyveromyces lactis40S ribosomal protein S8
10JRibosomal protein uS4polymer18220882.31UniProt (Q6CM18)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Kluyveromyces lactisKLLA0E23673p
11KRibosomal protein eS10polymer9611423.11UniProt (Q6CVZ5)
Pfam (PF03501)
In PDB		Kluyveromyces lactisKLLA0B08173p
12LRibosomal protein uS17polymer15517712.71UniProt (Q6CX80)
Pfam (PF16205)
Pfam (PF00366)
In PDB		Kluyveromyces lactisKLLA0A10483p
13MRibosomal protein eS12polymer12213124.91UniProt (Q6CLU4)
Pfam (PF01248)
In PDB		Kluyveromyces lactis40S ribosomal protein S12
14NRibosomal protein uS15polymer15016858.71UniProt (Q6CJK0)
Pfam (PF08069)
Pfam (PF00312)
In PDB		Kluyveromyces lactisKLLA0F18040p
15ORibosomal protein uS14polymer12713458.41UniProt (P27069)
Pfam (PF00411)
In PDB		Kluyveromyces lactis40S ribosomal protein S14, RP59
16PRibosomal protein uS19polymer12314055.61UniProt (Q6CKV4)
Pfam (PF00203)
In PDB		Kluyveromyces lactisKLLA0F07843p
17QRibosomal protein uS9polymer14115656.31UniProt (Q875N2)
Pfam (PF00380)
In PDB		Kluyveromyces lactis40S ribosomal protein S16
18RRibosomal protein eS17polymer12914729.01UniProt (Q6CWU3)
Pfam (PF00833)
In PDB		Kluyveromyces lactisKLLA0B01474p
19SRibosomal protein uS13polymer14516953.41UniProt (Q6CWT9)
Pfam (PF00416)
In PDB		Kluyveromyces lactisKLLA0B01562p
20TRibosomal protein eS19polymer14315747.81UniProt (Q6CXM0)
Pfam (PF01090)
In PDB		Kluyveromyces lactisKLLA0A07194p
21URibosomal protein uS10polymer10612032.11UniProt (Q6CIM1)
Pfam (PF00338)
In PDB		Kluyveromyces lactisKLLA0F25542p
22VRibosomal protein eS21polymer879797.91UniProt (Q6CXT6)
Pfam (PF01249)
In PDB		Kluyveromyces lactis40S ribosomal protein S21
23WRibosomal protein uS8polymer12914513.81UniProt (Q6CW21)
Pfam (PF00410)
In PDB		Kluyveromyces lactis40S ribosomal protein S22
24XRibosomal protein uS21polymer14516047.91UniProt (Q875M3)
Pfam (PF00164)
In PDB		Kluyveromyces lactisRPS23
25YRibosomal protein eS24polymer13415063.41UniProt (Q6CU44)
Pfam (PF01282)
In PDB		Kluyveromyces lactis40S ribosomal protein S24
26ZRibosomal protein eS25polymer707939.21UniProt (Q6CW78)
Pfam (PF03297)
In PDB		Kluyveromyces lactisKLLA0B06182p
27aRibosomal protein eS26polymer10011454.61UniProt (Q6CS01)
Pfam (PF01283)
In PDB		Kluyveromyces lactisKLLA0D05115p
28bRibosomal protein eS27polymer828884.41UniProt (Q6CNL2)
Pfam (PF01667)
In PDB		Kluyveromyces lactis40S ribosomal protein S27
29cRibosomal protein eS28polymer637073.31UniProt (P33285)
Pfam (PF01200)
In PDB		Kluyveromyces lactis40S ribosomal protein S28, S33
30dRibosomal protein eS29polymer536322.11UniProt (Q6CPG3)
Pfam (PF00253)
In PDB		Kluyveromyces lactis40S ribosomal protein S29
31eRibosomal protein eS30polymer556329.41UniProt (Q6CUH5)
Pfam (PF04758)
In PDB		Kluyveromyces lactisKLLA0C04809p
32fRibosomal protein eS31polymer697958.41UniProt (P69061)
Pfam (PF01599)
In PDB		Kluyveromyces lactisUbiquitin-40S ribosomal protein S27a
33gRibosomal protein RACK1polymer32435612.71UniProt (Q6CNI7)
Pfam (PF00400)
In PDB		Kluyveromyces lactisKLLA0E12277p
34218S ribosomal RNApolymer1780573508.91Kluyveromyces lactis
35iCricket paralysis virus IRES RNApolymer19261462.21GenBank (8895506)Cricket paralysis virus
362, G, N, T, XMAGNESIUM IONnon-polymer24.380Chemie (MG)
37a, b, fZINC IONnon-polymer65.43Chemie (ZN)
Sequence modifications
i: 6030 - 6221 (GenBank: 8895506)
PDBExternal DatabaseDetails
C 6176U 6176conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains35
Total formula weight1181721.7
Non-Polymers*Number of molecules83
Total formula weight2140.6
All*Total formula weight1183862.3
*Water molecules are not included.

221716

PDB entries from 2024-06-26

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