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5IT7

Structure of the Kluyveromyces lactis 80S ribosome in complex with the cricket paralysis virus IRES and eEF2

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1525S ribosomal RNApolymer32701056706.41Kluyveromyces lactis (Yeast)
275S ribosomal RNApolymer12138951.11GenBank (768843563)Kluyveromyces lactis (Yeast)
385.8S ribosomal RNApolymer15750293.61GenBank (820806853)Kluyveromyces lactis (Yeast)
4AAKLLA0D16027ppolymer24926843.81UniProt (Q6CQM3)
Pfam (PF00181)
Pfam (PF03947)
In PDB
Kluyveromyces lactis (Yeast)
5BB60S ribosomal protein L3polymer38443422.11UniProt (Q6CJR7)
Pfam (PF00297)
In PDB
Kluyveromyces lactis (Yeast)
6CCKLLA0B07139ppolymer36038993.91UniProt (Q6CW41)
Pfam (PF14374)
Pfam (PF00573)
In PDB
Kluyveromyces lactis (Yeast)
7DDKLLA0D06941ppolymer29533734.81UniProt (Q6CRR9)
Pfam (PF17144)
Pfam (PF14204)
In PDB
Kluyveromyces lactis (Yeast)
8EEKLLA0B04686ppolymer17019492.71UniProt (Q6CWE7)
Pfam (PF01159)
In PDB
Kluyveromyces lactis (Yeast)
9FFKLLA0D03410ppolymer22225112.01UniProt (Q6CS71)
Pfam (PF08079)
Pfam (PF00327)
In PDB
Kluyveromyces lactis (Yeast)
10GGKLLA0E00573ppolymer23325954.31UniProt (B4UN96)
Pfam (PF01248)
In PDB
Kluyveromyces lactis (Yeast)
11HHKLLA0F04499ppolymer19121730.11UniProt (Q6CLA6)
Pfam (PF00347)
In PDB
Kluyveromyces lactis (Yeast)
12IIKLLA0D05643ppolymer21624998.01UniProt (Q6CRX7)
Pfam (PF00252)
In PDB
Kluyveromyces lactis (Yeast)
13JJKLLA0F08261ppolymer16819203.11UniProt (Q6CKT4)
Pfam (PF00281)
Pfam (PF00673)
In PDB
Kluyveromyces lactis (Yeast)
14LL60S ribosomal protein L13polymer19722442.01UniProt (Q875M0)
Pfam (PF01294)
In PDB
Kluyveromyces lactis (Yeast)
15MMKLLA0B13409ppolymer13614835.41UniProt (Q6CVB1)
Pfam (PF00467)
Pfam (PF01929)
In PDB
Kluyveromyces lactis (Yeast)
16NNRibosomal protein L15polymer20224193.91UniProt (Q6CJL7)
Pfam (PF00827)
In PDB
Kluyveromyces lactis (Yeast)
17OOKLLA0F04675ppolymer19822254.11UniProt (Q6CL98)
Pfam (PF00572)
In PDB
Kluyveromyces lactis (Yeast)
18PPKLLA0A06336ppolymer18020322.01UniProt (Q6CXQ6)
Pfam (PF00237)
In PDB
Kluyveromyces lactis (Yeast)
19QQKLLA0A07227ppolymer18420479.91UniProt (Q6CXL8)
Pfam (PF17135)
In PDB
Kluyveromyces lactis (Yeast)
20RRKLLA0E12453ppolymer18821688.31UniProt (Q6CNH9)
Pfam (PF01280)
In PDB
Kluyveromyces lactis (Yeast)
21SS60S ribosomal protein L20polymer16920046.41Kluyveromyces lactis (Yeast)
22TTKLLA0E23651ppolymer15817969.91UniProt (Q6CM20)
Pfam (PF01157)
In PDB
Kluyveromyces lactis (Yeast)
23UUKLLA0D05181ppolymer10011419.01UniProt (Q6CRZ8)
Pfam (PF01776)
In PDB
Kluyveromyces lactis (Yeast)
24VVKLLA0E06997ppolymer13213997.41UniProt (Q6CP75)
Pfam (PF00238)
In PDB
Kluyveromyces lactis (Yeast)
25WW60S ribosomal protein L24polymer627279.51UniProt (P38665)
Pfam (PF01246)
In PDB
Kluyveromyces lactis (Yeast)Ribosomal protein L30
26XX60S ribosomal protein L25polymer12113700.01UniProt (P48045)
Pfam (PF03939)
Pfam (PF00276)
In PDB
Kluyveromyces lactis (Yeast)
27YYKLLA0B05742ppolymer12514127.51UniProt (Q6CW97)
Pfam (PF16906)
Pfam (PF00467)
In PDB
Kluyveromyces lactis (Yeast)
28ZZKLLA0E03455ppolymer13415398.11UniProt (Q6CPN9)
Pfam (PF01777)
In PDB
Kluyveromyces lactis (Yeast)
29aaRPL28polymer14716382.21UniProt (Q8J287)
Pfam (PF00828)
In PDB
Kluyveromyces lactis (Yeast)
30bbKLLA0D16071ppolymer576500.61UniProt (Q6CQM1)
Pfam (PF01779)
In PDB
Kluyveromyces lactis (Yeast)
31cc60S ribosomal protein L30polymer9710511.31UniProt (P38664)
Pfam (PF01248)
In PDB
Kluyveromyces lactis (Yeast)L32
32ddKLLA0B02937ppolymer10612360.51UniProt (Q6CWM6)
Pfam (PF01198)
In PDB
Kluyveromyces lactis (Yeast)
33eeKLLA0E06843ppolymer12213941.41UniProt (Q6CP82)
Pfam (PF01655)
In PDB
Kluyveromyces lactis (Yeast)
34ffKLLA0D07405ppolymer10511863.71UniProt (Q6CRP7)
Pfam (PF01247)
In PDB
Kluyveromyces lactis (Yeast)
35ggKLLA0C08371ppolymer12113579.91UniProt (Q6CU17)
Pfam (PF01199)
In PDB
Kluyveromyces lactis (Yeast)
36hhKLLA0F05247ppolymer11613677.21UniProt (Q6CL71)
Pfam (PF00831)
In PDB
Kluyveromyces lactis (Yeast)
37ii60S ribosomal protein L36polymer9810925.91UniProt (Q6CR18)
Pfam (PF01158)
In PDB
Kluyveromyces lactis (Yeast)
38jjRibosomal protein L37polymer859679.21UniProt (Q6CUW0)
Pfam (PF01907)
In PDB
Kluyveromyces lactis (Yeast)
39kkKLLA0C18216ppolymer768794.41UniProt (Q6CSS8)
Pfam (PF01781)
In PDB
Kluyveromyces lactis (Yeast)
40ll60S ribosomal protein L39polymer496114.31UniProt (P04650)
Pfam (PF00832)
In PDB
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L46,YL40
41mmUbiquitin fusion proteinpolymer515933.21UniProt (Q9Y854)
Pfam (PF01020)
In PDB
Kluyveromyces lactis (Yeast)
42nn60S ribosomal protein L41-Apolymer253354.21UniProt (P0CX86)
Pfam (PF05162)
In PDB
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L47,YL41
43oo60S ribosomal protein L44polymer10111676.91UniProt (P31027)
Pfam (PF00935)
In PDB
Kluyveromyces lactis (Yeast)60S ribosomal protein L41
44ppKLLA0E05941ppolymer879497.11UniProt (Q6CPC5)
Pfam (PF01780)
In PDB
Kluyveromyces lactis (Yeast)
45qqRibosomal proteinpolymer21724554.91UniProt (Q6CWR9)
Pfam (PF00687)
In PDB
Kluyveromyces lactis (Yeast)
46rr60S acidic ribosomal protein P0polymer19521411.61UniProt (Q6CW89)
Pfam (PF17777)
Pfam (PF00466)
In PDB
Kluyveromyces lactis (Yeast)
47KKuL11polymer14712528.41Kluyveromyces lactis (Yeast)
48A40S ribosomal protein S0polymer20622882.21UniProt (Q6CN12)
Pfam (PF00318)
In PDB
Kluyveromyces lactis (Yeast)
49B40S ribosomal protein S1polymer21424488.31UniProt (Q6CWD0)
Pfam (PF01015)
In PDB
Kluyveromyces lactis (Yeast)
50CKLLA0F09812ppolymer21723162.91UniProt (Q6CKL3)
Pfam (PF00333)
Pfam (PF03719)
In PDB
Kluyveromyces lactis (Yeast)
51DKLLA0D08305ppolymer22324830.91UniProt (Q6CRK7)
Pfam (PF07650)
Pfam (PF00189)
In PDB
Kluyveromyces lactis (Yeast)
52E40S ribosomal protein S4polymer26029486.31UniProt (Q6CWJ2)
Pfam (PF08071)
Pfam (PF01479)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
In PDB
Kluyveromyces lactis (Yeast)
53FKLLA0D10659ppolymer20622912.41UniProt (Q6CRA3)
Pfam (PF00177)
In PDB
Kluyveromyces lactis (Yeast)
54G40S ribosomal protein S6polymer22625811.01UniProt (Q6CM04)
Pfam (PF01092)
In PDB
Kluyveromyces lactis (Yeast)
55HKLLA0C13519ppolymer18421033.61UniProt (Q6CTD6)
Pfam (PF01251)
In PDB
Kluyveromyces lactis (Yeast)
56I40S ribosomal protein S8polymer20022511.51UniProt (Q6CMG3)
Pfam (PF01201)
In PDB
Kluyveromyces lactis (Yeast)
57JKLLA0E23673ppolymer18220882.31UniProt (Q6CM18)
Pfam (PF00163)
Pfam (PF01479)
In PDB
Kluyveromyces lactis (Yeast)
58KKLLA0B08173ppolymer9611423.11UniProt (Q6CVZ5)
Pfam (PF03501)
In PDB
Kluyveromyces lactis (Yeast)
59LKLLA0A10483ppolymer15517712.71UniProt (Q6CX80)
Pfam (PF16205)
Pfam (PF00366)
In PDB
Kluyveromyces lactis (Yeast)
60M40S ribosomal protein S12polymer12213124.91UniProt (Q6CLU4)
Pfam (PF01248)
In PDB
Kluyveromyces lactis (Yeast)
61NKLLA0F18040ppolymer15016858.71UniProt (Q6CJK0)
Pfam (PF08069)
Pfam (PF00312)
In PDB
Kluyveromyces lactis (Yeast)
62O40S ribosomal protein S14polymer12713458.41UniProt (P27069)
Pfam (PF00411)
In PDB
Kluyveromyces lactis (Yeast)RP59
63PKLLA0F07843ppolymer12313969.51UniProt (Q6CKV4)
Pfam (PF00203)
In PDB
Kluyveromyces lactis (Yeast)
64Q40S ribosomal protein S16polymer14115656.31UniProt (Q875N2)
Pfam (PF00380)
In PDB
Kluyveromyces lactis (Yeast)
65RKLLA0B01474ppolymer12914729.01UniProt (Q6CWU3)
Pfam (PF00833)
In PDB
Kluyveromyces lactis (Yeast)
66SKLLA0B01562ppolymer14516953.41UniProt (Q6CWT9)
Pfam (PF00416)
In PDB
Kluyveromyces lactis (Yeast)
67TKLLA0A07194ppolymer14315747.81UniProt (Q6CXM0)
Pfam (PF01090)
In PDB
Kluyveromyces lactis (Yeast)
68UKLLA0F25542ppolymer10612032.11UniProt (Q6CIM1)
Pfam (PF00338)
In PDB
Kluyveromyces lactis (Yeast)
69V40S ribosomal protein S21polymer879797.91UniProt (Q6CXT6)
Pfam (PF01249)
In PDB
Kluyveromyces lactis (Yeast)
70W40S ribosomal protein S22polymer12914513.81UniProt (Q6CW21)
Pfam (PF00410)
In PDB
Kluyveromyces lactis (Yeast)
71XRPS23polymer14516047.91UniProt (Q875M3)
Pfam (PF00164)
In PDB
Kluyveromyces lactis (Yeast)
72Y40S ribosomal protein S24polymer13415063.41UniProt (Q6CU44)
Pfam (PF01282)
In PDB
Kluyveromyces lactis (Yeast)
73ZKLLA0B06182ppolymer707939.21UniProt (Q6CW78)
Pfam (PF03297)
In PDB
Kluyveromyces lactis (Yeast)
74aKLLA0D05115ppolymer10011454.61UniProt (Q6CS01)
Pfam (PF01283)
In PDB
Kluyveromyces lactis (Yeast)
75b40S ribosomal protein S27polymer828884.41UniProt (Q6CNL2)
Pfam (PF01667)
In PDB
Kluyveromyces lactis (Yeast)
76c40S ribosomal protein S28polymer637073.31UniProt (P33285)
Pfam (PF01200)
In PDB
Kluyveromyces lactis (Yeast)S33
77d40S ribosomal protein S29polymer536322.11UniProt (Q6CPG3)
Pfam (PF00253)
In PDB
Kluyveromyces lactis (Yeast)
78eKLLA0C04809ppolymer556329.41UniProt (Q6CUH5)
Pfam (PF04758)
In PDB
Kluyveromyces lactis (Yeast)
79fUbiquitin-40S ribosomal protein S27apolymer697958.41UniProt (P69061)
Pfam (PF01599)
In PDB
Kluyveromyces lactis (Yeast)
80gKLLA0E12277ppolymer32435612.71UniProt (Q6CNI7)
Pfam (PF00400)
In PDB
Kluyveromyces lactis (Yeast)
81218S ribosomal RNApolymer1798579239.61GenBank (49642208)Kluyveromyces lactis (Yeast)
824cricket paralysis virus IRESpolymer19060732.81Cricket paralysis virus
831Eft2ppolymer82791592.01UniProt (W7R097)
In PDB
Saccharomyces cerevisiae P283
842, 5, N, 1, fMAGNESIUM IONnon-polymer24.380Chemie (MG)
85jj, mm, oo, a, b...ZINC IONnon-polymer65.46Chemie (ZN)
861PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTERnon-polymer521.21Chemie (GCP)
871(2S)-1-amino-N,N,N-trimethyl-1-oxobutan-2-aminiumnon-polymer145.21Chemie (6EM)
Sequence modifications
CC: 3 - 361 (UniProt: Q6CW41)
PDBExternal DatabaseDetails
Arg 3Ile 3conflict
qq: 1 - 217 (UniProt: Q6CWR9)
PDBExternal DatabaseDetails
Glu 11Asp 11conflict
His 12Asn 12conflict
Arg 152Lys 152conflict
P: 8 - 129 (UniProt: Q6CKV4)
PDBExternal DatabaseDetails
Ala 130-expression tag
2: 1 - 1798 (GenBank: 49642208)
PDBExternal DatabaseDetails
G 676U 1506854conflict
U 678G 1506852conflict
1: 5 - 831 (UniProt: W7R097)
PDBExternal DatabaseDetails
Glu 310Asp 310conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains83
Total formula weight3187105.1
Non-Polymers*Number of molecules88
Total formula weight3003.3
All*Total formula weight3190108.4
*Water molecules are not included.

225158

PDB entries from 2024-09-18

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