5IMY
Trapped Toxin
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, D (A, B) | Vaginolysin | polymer | 490 | 54213.4 | 2 | UniProt (B2YGA4) Pfam (PF01289) Pfam (PF17440) | Gardnerella vaginalis | |
| 2 | B, C (C, D) | CD59 glycoprotein | polymer | 78 | 9101.3 | 2 | UniProt (P13987) Pfam (PF00021) | Homo sapiens (Human) | 1F5 antigen,20 kDa homologous restriction factor,HRF20,MAC-inhibitory protein,MAC-IP,MEM43 antigen,Membrane attack complex inhibition factor,MACIF,Membrane inhibitor of reactive lysis,MIRL,Protectin |
| 3 | E, F, G, H (A, C, D, B) | water | water | 18.0 | 137 | Chemie (HOH) |
Sequence modifications
A, B: 29 - 516 (UniProt: B2YGA4)
C, D: 1 - 77 (UniProt: P13987)
| PDB | External Database | Details |
|---|---|---|
| Ser 27 | - | expression tag |
| Asn 28 | - | expression tag |
| His 30 | Met 30 | conflict |
| Met 31 | Ala 31 | conflict |
| Cys 333 | Thr 333 | conflict |
| Cys 348 | Ile 348 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Met 0 | - | initiating methionine |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 126629.3 | |
| All* | Total formula weight | 126629.3 |
