5IMR
Structure of ribosome bound to cofactor at 5.7 angstrom resolution
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 16S ribosomal RNA | polymer | 1522 | 493958.3 | 1 | GenBank (55771382) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 2 | B (F) | 30S ribosomal protein S2 | polymer | 256 | 29317.7 | 1 | UniProt (P80371) Pfam (PF00318) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 3 | C (G) | 30S ribosomal protein S3 | polymer | 239 | 26751.1 | 1 | UniProt (P80372) Pfam (PF07650) Pfam (PF00189) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 4 | D (H) | 30S ribosomal protein S4 | polymer | 209 | 24373.4 | 1 | UniProt (P80373) Pfam (PF00163) Pfam (PF01479) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 5 | E (I) | 30S ribosomal protein S5 | polymer | 162 | 17583.4 | 1 | UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 6 | F (J) | 30S ribosomal protein S6 | polymer | 101 | 11988.8 | 1 | UniProt (Q5SLP8) Pfam (PF01250) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | TS9 |
| 7 | G (K) | 30S ribosomal protein S7 | polymer | 156 | 18051.0 | 1 | UniProt (P17291) Pfam (PF00177) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 8 | H (L) | 30S ribosomal protein S8 | polymer | 138 | 15868.6 | 1 | UniProt (Q5SHQ2) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 9 | I (M) | 30S ribosomal protein S9 | polymer | 128 | 14410.6 | 1 | UniProt (P80374) Pfam (PF00380) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 10 | J (N) | 30S ribosomal protein S10 | polymer | 105 | 11955.0 | 1 | UniProt (Q5SHN7) Pfam (PF00338) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 11 | K (O) | 30S ribosomal protein S11 | polymer | 129 | 13737.9 | 1 | UniProt (P80376) Pfam (PF00411) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 12 | L (P) | 30S ribosomal protein S12 | polymer | 132 | 14637.4 | 1 | UniProt (Q5SHN3) Pfam (PF00164) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 13 | M (Q) | 30S ribosomal protein S13 | polymer | 126 | 14338.9 | 1 | UniProt (P80377) Pfam (PF00416) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 14 | N (R) | 30S ribosomal protein S14 type Z | polymer | 61 | 7158.7 | 1 | UniProt (Q5SHQ1) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 15 | O (S) | 30S ribosomal protein S15 | polymer | 89 | 10578.4 | 1 | UniProt (Q5SJ76) Pfam (PF00312) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 16 | P (T) | 30S ribosomal protein S16 | polymer | 88 | 10410.0 | 1 | UniProt (Q5SJH3) Pfam (PF00886) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 17 | Q (U) | 30S ribosomal protein S17 | polymer | 105 | 12324.7 | 1 | UniProt (P24321) Pfam (PF00366) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 18 | R (V) | 30S ribosomal protein S18 | polymer | 88 | 10244.3 | 1 | UniProt (P80382) Pfam (PF01084) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 19 | S (W) | 30S ribosomal protein S19 | polymer | 93 | 10605.5 | 1 | UniProt (Q5SHP2) Pfam (PF00203) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 20 | T (X) | 30S ribosomal protein S20 | polymer | 106 | 11736.1 | 1 | UniProt (P80380) Pfam (PF01649) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 21 | U (Y) | 30S ribosomal protein Thx | polymer | 27 | 3350.0 | 1 | UniProt (Q5SIH3) Pfam (PF17070) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | S31 |
| 22 | V (C) | Elongation factor 4 | polymer | 610 | 67690.7 | 1 | UniProt (Q5SKA7) Pfam (PF00009) Pfam (PF03144) Pfam (PF00679) Pfam (PF06421) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | EF-4,Ribosomal back-translocase LepA |
| 23 | W (D) | 23S ribosomal RNA | polymer | 2893 | 940788.9 | 1 | GenBank (55771382) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 24 | X (E) | 5S ribosomal RNA | polymer | 123 | 39846.8 | 1 | GenBank (55771382) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 25 | Y (Z) | 50S ribosomal protein L1 | polymer | 229 | 24867.7 | 1 | UniProt (P27150) Pfam (PF00687) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 26 | Z (a) | 50S ribosomal protein L2 | polymer | 276 | 30532.6 | 1 | UniProt (P60405) Pfam (PF00181) Pfam (PF03947) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 27 | AA (b) | 50S ribosomal protein L3 | polymer | 206 | 22450.2 | 1 | UniProt (Q5SHN8) Pfam (PF00297) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 28 | BA (c) | 50S ribosomal protein L4 | polymer | 210 | 23271.9 | 1 | UniProt (Q5SHN9) Pfam (PF00573) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | L1e |
| 29 | CA (d) | 50S ribosomal protein L5 | polymer | 182 | 21061.6 | 1 | UniProt (Q5SHQ0) Pfam (PF00281) Pfam (PF00673) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 30 | DA (e) | 50S ribosomal protein L6 | polymer | 180 | 19568.9 | 1 | UniProt (Q5SHQ3) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 31 | EA (f) | 50S ribosomal protein L13 | polymer | 140 | 15927.9 | 1 | UniProt (P60488) Pfam (PF00572) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 32 | FA (g) | 50S ribosomal protein L14 | polymer | 122 | 13309.6 | 1 | UniProt (P60558) Pfam (PF00238) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 33 | GA (h) | 50S ribosomal protein L15 | polymer | 150 | 16319.1 | 1 | UniProt (Q5SHQ7) Pfam (PF00828) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 34 | HA (i) | 50S ribosomal protein L16 | polymer | 141 | 15993.9 | 1 | UniProt (P60489) Pfam (PF00252) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 35 | IA (j) | 50S ribosomal protein L17 | polymer | 118 | 13750.1 | 1 | UniProt (Q9Z9H5) Pfam (PF01196) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 36 | JA (k) | 50S ribosomal protein L18 | polymer | 112 | 12639.8 | 1 | UniProt (Q5SHQ4) Pfam (PF00861) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | TL24 |
| 37 | KA (l) | 50S ribosomal protein L19 | polymer | 146 | 17188.8 | 1 | UniProt (P60490) Pfam (PF01245) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 38 | LA (m) | 50S ribosomal protein L20 | polymer | 118 | 13779.3 | 1 | UniProt (P60491) Pfam (PF00453) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 39 | MA (n) | 50S ribosomal protein L21 | polymer | 101 | 11069.2 | 1 | UniProt (P60492) Pfam (PF00829) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 40 | NA (o) | 50S ribosomal protein L22 | polymer | 113 | 12808.1 | 1 | UniProt (Q5SHP3) Pfam (PF00237) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 41 | OA (p) | 50S ribosomal protein L23 | polymer | 96 | 10759.8 | 1 | UniProt (Q5SHP0) Pfam (PF00276) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 42 | PA (q) | 50S ribosomal protein L24 | polymer | 110 | 12085.6 | 1 | UniProt (Q5SHP9) Pfam (PF00467) Pfam (PF17136) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 43 | QA (r) | 50S ribosomal protein L25 | polymer | 206 | 23238.6 | 1 | UniProt (Q5SHZ1) Pfam (PF01386) Pfam (PF14693) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | TL5 |
| 44 | RA (s) | 50S ribosomal protein L27 | polymer | 85 | 9529.1 | 1 | UniProt (P60493) Pfam (PF01016) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 45 | SA (t) | 50S ribosomal protein L29 | polymer | 67 | 8112.6 | 1 | UniProt (Q9LCY4) Pfam (PF00831) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 46 | TA (u) | 50S ribosomal protein L30 | polymer | 60 | 6799.1 | 1 | UniProt (Q5SHQ6) Pfam (PF00327) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 47 | UA (v) | 50S ribosomal protein L31 | polymer | 71 | 8300.5 | 1 | UniProt (Q5SJE1) Pfam (PF01197) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 48 | VA (w) | 50S ribosomal protein L32 | polymer | 60 | 6722.1 | 1 | UniProt (P80339) Pfam (PF01783) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 49 | WA (x) | 50S ribosomal protein L33 | polymer | 54 | 6632.9 | 1 | UniProt (P35871) Pfam (PF00471) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 50 | XA (y) | 50S ribosomal protein L34 | polymer | 49 | 6132.4 | 1 | UniProt (P80340) Pfam (PF00468) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 51 | YA (z) | 50S ribosomal protein L35 | polymer | 65 | 7506.2 | 1 | UniProt (Q5SKU1) Pfam (PF01632) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 52 | ZA (1) | 50S ribosomal protein L36 | polymer | 37 | 4435.4 | 1 | UniProt (Q5SHR2) Pfam (PF00444) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | Ribosomal protein B |
| 53 | AB (2) | 50S ribosomal protein L10 | polymer | 173 | 18586.6 | 1 | UniProt (Q8VVE3) Pfam (PF00466) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 54 | BB (3) | 50S ribosomal protein L11 | polymer | 147 | 15526.1 | 1 | UniProt (Q5SLP6) Pfam (PF03946) Pfam (PF00298) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 55 | CB (4) | P site- tRNA | polymer | 77 | 24802.8 | 1 | GenBank (998643509) | Salmonella enterica subsp. enterica serovar Enteritidis str. SA20094389 | |
| 56 | DB (5) | E site- tRNA | polymer | 76 | 24485.5 | 1 | GenBank (998643509) | Salmonella enterica subsp. enterica serovar Enteritidis str. SA20094389 | |
| 57 | EB (C) | PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER | non-polymer | 521.2 | 1 | Chemie (GCP) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 56 |
| Total formula weight | 2309900.1 | |
| Non-Polymers* | Number of molecules | 1 |
| Total formula weight | 521.2 | |
| All* | Total formula weight | 2310421.3 |
