Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5IMR

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A16S ribosomal RNApolymer1522493958.31GenBank (55771382)Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
2F30S ribosomal protein S2polymer25629317.71UniProt (P80371)
Pfam (PF00318)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
3G30S ribosomal protein S3polymer23926751.11UniProt (P80372)
Pfam (PF07650)
Pfam (PF00189)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
4H30S ribosomal protein S4polymer20924373.41UniProt (P80373)
Pfam (PF00163)
Pfam (PF01479)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
5I30S ribosomal protein S5polymer16217583.41UniProt (Q5SHQ5)
Pfam (PF00333)
Pfam (PF03719)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
6J30S ribosomal protein S6polymer10111988.81UniProt (Q5SLP8)
Pfam (PF01250)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)TS9
7K30S ribosomal protein S7polymer15618051.01UniProt (P17291)
Pfam (PF00177)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
8L30S ribosomal protein S8polymer13815868.61UniProt (Q5SHQ2)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
9M30S ribosomal protein S9polymer12814410.61UniProt (P80374)
Pfam (PF00380)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
10N30S ribosomal protein S10polymer10511955.01UniProt (Q5SHN7)
Pfam (PF00338)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
11O30S ribosomal protein S11polymer12913737.91UniProt (P80376)
Pfam (PF00411)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
12P30S ribosomal protein S12polymer13214637.41UniProt (Q5SHN3)
Pfam (PF00164)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
13Q30S ribosomal protein S13polymer12614338.91UniProt (P80377)
Pfam (PF00416)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
14R30S ribosomal protein S14 type Zpolymer617158.71UniProt (Q5SHQ1)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
15S30S ribosomal protein S15polymer8910578.41UniProt (Q5SJ76)
Pfam (PF00312)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
16T30S ribosomal protein S16polymer8810410.01UniProt (Q5SJH3)
Pfam (PF00886)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
17U30S ribosomal protein S17polymer10512324.71UniProt (P24321)
Pfam (PF00366)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
18V30S ribosomal protein S18polymer8810244.31UniProt (P80382)
Pfam (PF01084)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
19W30S ribosomal protein S19polymer9310605.51UniProt (Q5SHP2)
Pfam (PF00203)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
20X30S ribosomal protein S20polymer10611736.11UniProt (P80380)
Pfam (PF01649)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
21Y30S ribosomal protein Thxpolymer273350.01UniProt (Q5SIH3)
Pfam (PF17070)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)S31
22CElongation factor 4polymer61067690.71UniProt (Q5SKA7)
Pfam (PF00009)
Pfam (PF03144)
Pfam (PF00679)
Pfam (PF06421)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)EF-4,Ribosomal back-translocase LepA
23D23S ribosomal RNApolymer2893940788.91GenBank (55771382)Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
24E5S ribosomal RNApolymer12339846.81GenBank (55771382)Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
25Z50S ribosomal protein L1polymer22924867.71UniProt (P27150)
Pfam (PF00687)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
26a50S ribosomal protein L2polymer27630532.61UniProt (P60405)
Pfam (PF00181)
Pfam (PF03947)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
27b50S ribosomal protein L3polymer20622450.21UniProt (Q5SHN8)
Pfam (PF00297)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
28c50S ribosomal protein L4polymer21023271.91UniProt (Q5SHN9)
Pfam (PF00573)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)L1e
29d50S ribosomal protein L5polymer18221061.61UniProt (Q5SHQ0)
Pfam (PF00281)
Pfam (PF00673)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
30e50S ribosomal protein L6polymer18019568.91UniProt (Q5SHQ3)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
31f50S ribosomal protein L13polymer14015927.91UniProt (P60488)
Pfam (PF00572)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
32g50S ribosomal protein L14polymer12213309.61UniProt (P60558)
Pfam (PF00238)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
33h50S ribosomal protein L15polymer15016319.11UniProt (Q5SHQ7)
Pfam (PF00828)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
34i50S ribosomal protein L16polymer14115993.91UniProt (P60489)
Pfam (PF00252)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
35j50S ribosomal protein L17polymer11813750.11UniProt (Q9Z9H5)
Pfam (PF01196)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
36k50S ribosomal protein L18polymer11212639.81UniProt (Q5SHQ4)
Pfam (PF00861)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)TL24
37l50S ribosomal protein L19polymer14617188.81UniProt (P60490)
Pfam (PF01245)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
38m50S ribosomal protein L20polymer11813779.31UniProt (P60491)
Pfam (PF00453)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
39n50S ribosomal protein L21polymer10111069.21UniProt (P60492)
Pfam (PF00829)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
40o50S ribosomal protein L22polymer11312808.11UniProt (Q5SHP3)
Pfam (PF00237)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
41p50S ribosomal protein L23polymer9610759.81UniProt (Q5SHP0)
Pfam (PF00276)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
42q50S ribosomal protein L24polymer11012085.61UniProt (Q5SHP9)
Pfam (PF00467)
Pfam (PF17136)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
43r50S ribosomal protein L25polymer20623238.61UniProt (Q5SHZ1)
Pfam (PF01386)
Pfam (PF14693)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)TL5
44s50S ribosomal protein L27polymer859529.11UniProt (P60493)
Pfam (PF01016)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
45t50S ribosomal protein L29polymer678112.61UniProt (Q9LCY4)
Pfam (PF00831)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
46u50S ribosomal protein L30polymer606799.11UniProt (Q5SHQ6)
Pfam (PF00327)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
47v50S ribosomal protein L31polymer718300.51UniProt (Q5SJE1)
Pfam (PF01197)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
48w50S ribosomal protein L32polymer606722.11UniProt (P80339)
Pfam (PF01783)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
49x50S ribosomal protein L33polymer546632.91UniProt (P35871)
Pfam (PF00471)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
50y50S ribosomal protein L34polymer496132.41UniProt (P80340)
Pfam (PF00468)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
51z50S ribosomal protein L35polymer657506.21UniProt (Q5SKU1)
Pfam (PF01632)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
52150S ribosomal protein L36polymer374435.41UniProt (Q5SHR2)
Pfam (PF00444)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Ribosomal protein B
53250S ribosomal protein L10polymer17318586.61UniProt (Q8VVE3)
Pfam (PF00466)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
54350S ribosomal protein L11polymer14715526.11UniProt (Q5SLP6)
Pfam (PF03946)
Pfam (PF00298)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
554P site- tRNApolymer7724802.81GenBank (998643509)Salmonella enterica subsp. enterica serovar Enteritidis str. SA20094389
565E site- tRNApolymer7624485.51GenBank (998643509)Salmonella enterica subsp. enterica serovar Enteritidis str. SA20094389
57CPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTERnon-polymer521.21Chemie (GCP)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains56
Total formula weight2309900.1
Non-Polymers*Number of molecules1
Total formula weight521.2
All*Total formula weight2310421.3
*Water molecules are not included.

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon