5IIB
Crystal structure of red abalone egg VERL repeat 3 in complex with sperm lysin at 1.64 A resolution (crystal form II)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Egg-lysin | polymer | 136 | 16295.2 | 1 | UniProt (P04552) Pfam (PF01303) | Haliotis rufescens (California red abalone) | Sperm-lysin |
| 2 | B (B) | Vitelline envelope sperm lysin receptor | polymer | 128 | 14432.4 | 1 | UniProt (Q8WR62) Pfam (PF11386) | Haliotis rufescens (California red abalone) | |
| 3 | C (C) | beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose | branched | 342.3 | 1 | In PDB BIRD (PRD_900003) | sucrose | ||
| 4 | D (A) | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID | non-polymer | 238.3 | 1 | Chemie (EPE) | |||
| 5 | E, F (B) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 2 | Chemie (NAG) | Haliotis rufescens (California red abalone) | ||
| 6 | G, H (A, B) | water | water | 18.0 | 126 | Chemie (HOH) |
Sequence modifications
B: 340 - 453 (UniProt: Q8WR62)
| PDB | External Database | Details |
|---|---|---|
| Glu 334 | - | expression tag |
| Thr 335 | - | expression tag |
| Gly 336 | - | expression tag |
| Ala 337 | - | expression tag |
| Ala 338 | - | expression tag |
| Ala 339 | - | expression tag |
| Leu 454 | - | expression tag |
| Glu 455 | - | expression tag |
| His 456 | - | expression tag |
| His 457 | - | expression tag |
| His 458 | - | expression tag |
| His 459 | - | expression tag |
| His 460 | - | expression tag |
| His 461 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 30727.6 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 342.3 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 680.7 | |
| All* | Total formula weight | 31750.6 |






