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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

5IBB

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
113, 1G16S ribosomal RNApolymer1522493997.32GenBank (55771382)Thermus thermophilus HB8
21E, 1230S ribosomal protein S2polymer25629317.72UniProt (P80371)
Pfam (PF00318)
In PDB		Thermus thermophilus HB8
32E, 2230S ribosomal protein S3polymer23926751.12UniProt (P80372)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Thermus thermophilus HB8
43E, 3230S ribosomal protein S4polymer20924373.42UniProt (P80373)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Thermus thermophilus HB8
54E, 4230S ribosomal protein S5polymer16217583.42UniProt (Q5SHQ5)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Thermus thermophilus HB8
65E, 5230S ribosomal protein S6polymer10111988.82UniProt (Q5SLP8)
Pfam (PF01250)
In PDB		Thermus thermophilus HB8TS9
76E, 6230S ribosomal protein S7polymer15618051.02UniProt (P17291)
Pfam (PF00177)
In PDB		Thermus thermophilus HB8
87E, 7230S ribosomal protein S8polymer13815868.62UniProt (Q5SHQ2)
In PDB		Thermus thermophilus HB8
98E, 8230S ribosomal protein S9polymer12814410.62UniProt (P80374)
Pfam (PF00380)
In PDB		Thermus thermophilus HB8
101I, 1A30S ribosomal protein S10polymer10511955.02UniProt (Q5SHN7)
Pfam (PF00338)
In PDB		Thermus thermophilus HB8
112I, 2A30S ribosomal protein S11polymer12913737.92UniProt (P80376)
Pfam (PF00411)
In PDB		Thermus thermophilus HB8
123I, 3A30S ribosomal protein S12polymer13214637.42UniProt (Q5SHN3)
Pfam (PF00164)
In PDB		Thermus thermophilus HB8
134I, 4A30S ribosomal protein S13polymer12614338.92UniProt (P80377)
Pfam (PF00416)
In PDB		Thermus thermophilus HB8
145I, 5A30S ribosomal protein S14 type Zpolymer617158.72UniProt (Q5SHQ1)
In PDB		Thermus thermophilus HB8
156I, 6A30S ribosomal protein S15polymer8910578.42UniProt (Q5SJ76)
Pfam (PF00312)
In PDB		Thermus thermophilus HB8
167I, 7A30S ribosomal protein S16polymer8810410.02UniProt (Q5SJH3)
Pfam (PF00886)
In PDB		Thermus thermophilus HB8
178I, 8A30S ribosomal protein S17polymer10512325.72UniProt (Q5SHP7)
In PDB		Thermus thermophilus HB8
189I, 9A30S ribosomal protein S18polymer8810258.32UniProt (Q5SLQ0)
Pfam (PF01084)
In PDB		Thermus thermophilus HB8
19AI, AA30S ribosomal protein S19polymer9310605.52UniProt (Q5SHP2)
Pfam (PF00203)
In PDB		Thermus thermophilus HB8
20BI, BA30S ribosomal protein S20polymer10611736.12UniProt (P80380)
Pfam (PF01649)
In PDB		Thermus thermophilus HB8
211F, 1B30S ribosomal protein Thxpolymer273350.02UniProt (Q5SIH3)
Pfam (PF17070)
In PDB		Thermus thermophilus HB8S31
221KtRNAValpolymer7624587.71Escherichia coli K-12
232K, 2LtRNAfMetpolymer7724862.02Escherichia coli K-12
243K, 3LtRNAValpolymer7624483.62Escherichia coli K-12
254K, 4LmRNApolymer309866.12Escherichia coli
261H, 1423S ribosomal RNApolymer2917948539.92GenBank (55771382)Thermus thermophilus HB8
2716, 1J5S ribosomal RNApolymer12239540.62GenBank (55771382)Thermus thermophilus HB8
2871, 7950S ribosomal protein L1polymer22924867.72UniProt (P27150)
Pfam (PF00687)
In PDB		Thermus thermophilus HB8
2911, 1950S ribosomal protein L2polymer27630532.62UniProt (P60405)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Thermus thermophilus HB8
3021, 2950S ribosomal protein L3polymer20622450.22UniProt (Q5SHN8)
Pfam (PF00297)
In PDB		Thermus thermophilus HB8
3131, 3950S ribosomal protein L4polymer21023271.92UniProt (Q5SHN9)
Pfam (PF00573)
In PDB		Thermus thermophilus HB8L1e
3241, 4950S ribosomal protein L5polymer18221061.62UniProt (Q5SHQ0)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Thermus thermophilus HB8
3351, 5950S ribosomal protein L6polymer18019568.92UniProt (Q5SHQ3)
In PDB		Thermus thermophilus HB8
3461, 6950S ribosomal protein L9polymer14816422.22UniProt (Q5SLQ1)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Thermus thermophilus HB8
3558, 1550S ribosomal protein L13polymer14015927.92UniProt (P60488)
Pfam (PF00572)
In PDB		Thermus thermophilus HB8
3668, 2550S ribosomal protein L14polymer12213323.62UniProt (Q5SHP8)
Pfam (PF00238)
In PDB		Thermus thermophilus HB8
3778, 3550S ribosomal protein L15polymer15016319.12UniProt (Q5SHQ7)
Pfam (PF00828)
In PDB		Thermus thermophilus HB8
3888, 4550S ribosomal protein L16polymer14115993.92UniProt (P60489)
Pfam (PF00252)
In PDB		Thermus thermophilus HB8
3998, 5550S ribosomal protein L17polymer11813750.12UniProt (Q9Z9H5)
Pfam (PF01196)
In PDB		Thermus thermophilus HB8
40A8, 6550S ribosomal protein L18polymer11212639.82UniProt (Q5SHQ4)
Pfam (PF00861)
In PDB		Thermus thermophilus HB8TL24
41B8, 7550S ribosomal protein L19polymer14617188.82UniProt (P60490)
Pfam (PF01245)
In PDB		Thermus thermophilus HB8
42C8, 8550S ribosomal protein L20polymer11813779.32UniProt (P60491)
Pfam (PF00453)
In PDB		Thermus thermophilus HB8
43D8, 9550S ribosomal protein L21polymer10111069.22UniProt (P60492)
Pfam (PF00829)
In PDB		Thermus thermophilus HB8
44E8, A550S ribosomal protein L22polymer11312808.12UniProt (Q5SHP3)
Pfam (PF00237)
In PDB		Thermus thermophilus HB8
45F8, B550S ribosomal protein L23polymer9610759.82UniProt (Q5SHP0)
Pfam (PF00276)
In PDB		Thermus thermophilus HB8
46G8, C550S ribosomal protein L24polymer11012085.62UniProt (Q5SHP9)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Thermus thermophilus HB8
47H8, D550S ribosomal protein L25polymer20623238.62UniProt (Q5SHZ1)
Pfam (PF01386)
Pfam (PF14693)
In PDB		Thermus thermophilus HB8TL5
48I8, E550S ribosomal protein L27polymer859529.12UniProt (P60493)
Pfam (PF01016)
In PDB		Thermus thermophilus HB8
49J8, F550S ribosomal protein L28polymer9811004.22UniProt (P60494)
Pfam (PF00830)
In PDB		Thermus thermophilus HB8
50K8, G550S ribosomal protein L29polymer728670.32UniProt (Q5SHP6)
Pfam (PF00831)
In PDB		Thermus thermophilus HB8
51L8, H550S ribosomal protein L30polymer606799.12UniProt (Q5SHQ6)
Pfam (PF00327)
In PDB		Thermus thermophilus HB8
52M8, I550S ribosomal protein L31polymer718300.52UniProt (Q5SJE1)
Pfam (PF01197)
In PDB		Thermus thermophilus HB8
53N8, J550S ribosomal protein L32polymer606722.12UniProt (P80339)
Pfam (PF01783)
In PDB		Thermus thermophilus HB8
54P8, L550S ribosomal protein L34polymer496132.42UniProt (P80340)
Pfam (PF00468)
In PDB		Thermus thermophilus HB8
55Q8, M550S ribosomal protein L35polymer657506.22UniProt (Q5SKU1)
Pfam (PF01632)
In PDB		Thermus thermophilus HB8
561LtRNAValpolymer7624497.61Thermus thermophilus HB8
571H, 14, 25, 13, 21...MAGNESIUM IONnon-polymer24.31344Chemie (MG)
5814, 1J, 1G, 13THERMINEnon-polymer188.35Chemie (SPE)
5932, 3EIRON/SULFUR CLUSTERnon-polymer351.62Chemie (SF4)
605A, 5I, C5, G8ZINC IONnon-polymer65.44Chemie (ZN)
61waterwater18.03180Chemie (HOH)
Sequence modifications
13, 1G: 0 - 1544 (GenBank: 55771382)
PDBExternal DatabaseDetails
G 1542U 132819conflict
1H, 14: 1 - 2907 (GenBank: 55771382)
PDBExternal DatabaseDetails
U 161Unk 9395conflict
A 654G 9920conflict
C 654G 9924conflict
G 654C 9935conflict
A 654C 9939conflict
U 1058G 10344conflict
A 1080C 10366conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains110
Total formula weight4533982.3
Non-Polymers*Number of molecules1355
Total formula weight34572.4
All*Total formula weight4568554.7
*Water molecules are not included.

219140

PDB entries from 2024-05-01

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