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5GPN

Architecture of mammalian respirasome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, M
(A, M)
Cytochrome b-c1 complex subunit 1, mitochondrialpolymer44649266.32UniProt (P31800)
Pfam (PF00675)
Pfam (PF05193)
Bos taurus (Bovine)
2B, N
(B, N)
Cytochrome b-c1 complex subunit 2, mitochondrialpolymer43946575.52UniProt (P23004)
Pfam (PF00675)
Pfam (PF05193)
Bos taurus (Bovine)Complex III subunit 2,Core protein II,Ubiquinol-cytochrome-c reductase complex core protein 2
3C, O
(C, O)
Cytochrome bpolymer37942620.32UniProt (P00157)
Pfam (PF00033)
Pfam (PF00032)
Bos taurus (Bovine)Complex III subunit 3,Complex III subunit III,Cytochrome b-c1 complex subunit 3,Ubiquinol-cytochrome-c reductase complex cytochrome b subunit
4D, P
(D, P)
Cytochrome c1, heme protein, mitochondrialpolymer24127323.32UniProt (P00125)
Pfam (PF02167)
Bos taurus (Bovine)Complex III subunit 4,Complex III subunit IV,Cytochrome b-c1 complex subunit 4,Ubiquinol-cytochrome-c reductase complex cytochrome c1 subunit,Cytochrome c-1
5E, Q
(E, Q)
Cytochrome b-c1 complex subunit Rieske, mitochondrialpolymer27429572.82Bos taurus (Bovine)Complex III subunit 5,Cytochrome b-c1 complex subunit 5,Rieske iron-sulfur protein,RISP,Ubiquinol-cytochrome c reductase iron-sulfur subunit
6F, R
(F, R)
Cytochrome b-c1 complex subunit 7polymer11013371.22Bos taurus (Bovine)Complex III subunit 7,Complex III subunit VII,QP-C,Ubiquinol-cytochrome c reductase complex 14 kDa protein
7G, S
(G, S)
Cytochrome b-c1 complex subunit 8polymer819606.02UniProt (P13271)
Pfam (PF02939)
Bos taurus (Bovine)Complex III subunit 8,Complex III subunit VIII,Ubiquinol-cytochrome c reductase complex 9.5 kDa protein,Ubiquinol-cytochrome c reductase complex ubiquinone-binding protein QP-C
8H, T
(H, T)
Cytochrome b-c1 complex subunit 6, mitochondrialpolymer789189.12UniProt (P00126)
Pfam (PF02320)
Bos taurus (Bovine)Complex III subunit 6,Complex III subunit VIII,Cytochrome c1 non-heme 11 kDa protein,Mitochondrial hinge protein,Ubiquinol-cytochrome c reductase complex 11 kDa protein
9I, U
(I, U)
Cytochrome b-c1 complex subunit Rieske, mitochondrialpolymer787964.32UniProt (P13272)
Pfam (PF09165)
Bos taurus (Bovine)Complex III subunit 5,Cytochrome b-c1 complex subunit 5,Rieske iron-sulfur protein,RISP,Ubiquinol-cytochrome c reductase iron-sulfur subunit
10J, L
(J, L)
Cytochrome b-c1 complex subunit 9polymer627209.32UniProt (P00130)
Pfam (PF05365)
Bos taurus (Bovine)Complex III subunit 9,Complex III subunit X,Cytochrome c1 non-heme 7 kDa protein,Ubiquinol-cytochrome c reductase complex 7.2 kDa protein
11K, V
(K, V)
Cytochrome b-c1 complex subunit 10polymer566527.62UniProt (P07552)
Pfam (PF08997)
Bos taurus (Bovine)Complex III subunit 10,Complex III subunit XI,Ubiquinol-cytochrome c reductase complex 6.4 kDa protein
12W
(W)
NADH dehydrogenase [ubiquinone] iron-sulfur protein 3polymer26430241.41UniProt (F1SIF2)Sus scrofa (Pig)
13X
(Y)
NADH-ubiquinone oxidoreductase 75 kDa subunitpolymer72779627.41UniProt (F1SHD7)
Pfam (PF13510)
Pfam (PF10588)
Pfam (PF22117)
Pfam (PF22151)
Pfam (PF00384)
Pfam (PF09326)
UniProt (by SIFTS) (A0A4X1V1H9)
Sus scrofa (Pig)
14Y
(Z)
NADH dehydrogenase [ubiquinone] iron-sulfur protein 2polymer46352552.31UniProt (F1S1A8)
Pfam (PF00346)
Sus scrofa (Pig)
15Z
(a)
NADH dehydrogenase [ubiquinone] iron-sulfur protein 7polymer21623777.71UniProt (I3LK43)
Pfam (PF01058)
UniProt (by SIFTS) (A0A8D1TL60)
Sus scrofa (Pig)
16AA
(b)
NADH dehydrogenase [ubiquinone] iron-sulfur protein 8polymer21223893.31Sus scrofa (Pig)
17BA
(c)
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrialpolymer46450637.81UniProt (F1RVN1)
Pfam (PF01512)
Pfam (PF22461)
Pfam (PF10589)
UniProt (by SIFTS) (A0A4X1SZP7)
Sus scrofa (Pig)
18CA
(d)
NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrialpolymer24927439.51UniProt (F1SM98)
Pfam (PF01257)
Sus scrofa (Pig)
19DA
(e)
NADH-ubiquinone oxidoreductase chain 1polymer31835667.51UniProt (O79874)
Pfam (PF00146)
Sus scrofa (Pig)NADH dehydrogenase subunit 1
20EA
(f)
NADH-ubiquinone oxidoreductase chain 2polymer34739077.51UniProt (O79875)
Pfam (PF00361)
Pfam (PF06444)
Sus scrofa (Pig)NADH dehydrogenase subunit 2
21FA
(g)
NADH-ubiquinone oxidoreductase chain 3polymer11512998.41UniProt (O79880)
Pfam (PF00507)
Sus scrofa (Pig)NADH dehydrogenase subunit 3
22GA
(h)
NADH-ubiquinone oxidoreductase chain 4polymer45951859.41UniProt (O79881)
Pfam (PF01059)
Pfam (PF00361)
Sus scrofa (Pig)NADH dehydrogenase subunit 4
23HA
(i)
NADH-ubiquinone oxidoreductase chain 4Lpolymer9810827.31UniProt (P56632)
Pfam (PF00420)
Sus scrofa (Pig)NADH dehydrogenase subunit 4L
24IA
(j)
NADH-ubiquinone oxidoreductase chain 5polymer60668695.51UniProt (Q9TDR1)
Pfam (PF00662)
Pfam (PF00361)
Pfam (PF06455)
Sus scrofa (Pig)NADH dehydrogenase subunit 5
25JA, KA
(k, l)
NADH-ubiquinone oxidoreductase chain 6polymer17519021.32UniProt (O79882)
Pfam (PF00499)
Sus scrofa (Pig)NADH dehydrogenase subunit 6
26LA
(m)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3polymer849225.61UniProt (F1RNI5)
Pfam (PF14987)
UniProt (by SIFTS) (A0A4X1VPG4)
Sus scrofa (Pig)
27MA
(n)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2polymer9911099.81Sus scrofa (Pig)
28NA
(o)
NADH dehydrogenase [ubiquinone] iron-sulfur protein 5polymer10612506.61UniProt (F1SV23)
Pfam (PF10200)
Sus scrofa (Pig)
29OA
(p)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9polymer37742606.31UniProt (F1SL07)
Pfam (PF01370)
Sus scrofa (Pig)
30PA, TA
(q, v)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrialpolymer35740476.12UniProt (F1SIS9)
Pfam (PF01712)
Sus scrofa (Pig)
31QA
(r)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13polymer14416911.61UniProt (F1S6Q1)
Pfam (PF06212)
UniProt (by SIFTS) (A0A8D1NRT6)
Sus scrofa (Pig)
32JB, RA
(t, Aa)
Acyl carrier proteinpolymer15617326.22UniProt (F1SAB6)Sus scrofa (Pig)
33RB, SA
(u, Ai)
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5polymer18921587.02UniProt (F1SGC6)
Pfam (PF09781)
Sus scrofa (Pig)
34UA
(w)
Mitochondrial NADH dehydrogenase Fe-S protein 4polymer17519718.51UniProt (G8IFA6)
Pfam (PF04800)
Sus scrofa (Pig)
35VA
(x)
NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrialpolymer12313349.01UniProt (F1S031)
Pfam (PF10276)
Sus scrofa (Pig)
36WA
(0)
Cytochrome c oxidase subunit 3polymer26129943.61Bos taurus (Bovine)Cytochrome c oxidase polypeptide III
37XA
(1)
Cytochrome c oxidase subunit 4 isoform 1, mitochondrialpolymer14717179.61UniProt (P00423)
Pfam (PF02936)
Bos taurus (Bovine)Cytochrome c oxidase polypeptide IV,Cytochrome c oxidase subunit IV isoform 1,COX IV-1
38YA
(2)
Cytochrome c oxidase subunit 5A, mitochondrialpolymer10912453.11UniProt (P00426)
Pfam (PF02284)
Bos taurus (Bovine)
39ZA
(3)
Cytochrome c oxidase subunit 5B, mitochondrialpolymer9810684.01UniProt (P00428)
Pfam (PF01215)
Bos taurus (Bovine)Cytochrome c oxidase polypeptide VIa,Cytochrome c oxidase polypeptide Vb
40AB
(4)
Cytochrome c oxidase subunit 6A2, mitochondrialpolymer849452.71UniProt (P07471)
Pfam (PF02046)
Bos taurus (Bovine)Cytochrome c oxidase polypeptide VIa-heart,COXVIAH,Cytochrome c oxidase polypeptide VIb
41BB
(5)
Cytochrome c oxidase subunit 6B1polymer8510039.21UniProt (P00429)
Pfam (PF02297)
Bos taurus (Bovine)Cytochrome c oxidase polypeptide VII,Cytochrome c oxidase subunit AED,Cytochrome c oxidase subunit VIb isoform 1,COX VIb-1
42CB
(6)
Cytochrome c oxidase subunit 6Cpolymer738495.01UniProt (P04038)
Pfam (PF02937)
Bos taurus (Bovine)Cytochrome c oxidase polypeptide VIc,Cytochrome c oxidase subunit STA
43DB
(7)
Cytochrome c oxidase subunit 7A1, mitochondrialpolymer596682.71UniProt (P07470)
Pfam (PF02238)
Bos taurus (Bovine)Cytochrome c oxidase subunit VIIIc,VIIIC,Cytochrome c oxidase subunit VIIa-heart,Cytochrome c oxidase subunit VIIa-H,Cytochrome c oxidase subunit VIIa-muscle,Cytochrome c oxidase subunit VIIa-M
44EB
(8)
Cytochrome c oxidase subunit 7B, mitochondrialpolymer566365.21UniProt (P13183)
Pfam (PF05392)
Bos taurus (Bovine)Cytochrome c oxidase polypeptide VIIb,IHQ
45FB
(9)
Cytochrome c oxidase subunit 7C, mitochondrialpolymer475449.41UniProt (P00430)
Pfam (PF02935)
Bos taurus (Bovine)Cytochrome c oxidase polypeptide VIIIA,Cytochrome c oxidase polypeptide VIIc
46GB
(s)
Cytochrome c oxidase subunit 8B, mitochondrialpolymer464967.81UniProt (P10175)
Pfam (PF02285)
Bos taurus (Bovine)Cytochrome c oxidase polypeptide VIII-heart,Cytochrome c oxidase subunit 8-1,Cytochrome c oxidase subunit 8H,IX,VIIIb
47HB
(y)
Cytochrome c oxidase subunit 1polymer51457065.81UniProt (P00396)
Pfam (PF00115)
Bos taurus (Bovine)Cytochrome c oxidase polypeptide I
48IB
(z)
Cytochrome c oxidase subunit 2polymer22726040.41UniProt (P68530)
Pfam (PF02790)
Pfam (PF00116)
Bos taurus (Bovine)Cytochrome c oxidase polypeptide II
49KB, QB
(Ab, Ah)
NADH dehydrogenase [ubiquinone] 1 unknown subunit fragmentpolymer13411422.12Sus scrofa (Pig)
50LB
(Ac)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1polymer708088.41UniProt (K7GR43)
Pfam (PF15879)
Sus scrofa (Pig)
51EC, MB, XB, YB
(Ad, Ao, Ap, Av)
NADH dehydrogenase [ubiquinone] 1 unknown subunit fragmentpolymer433677.54Sus scrofa (Pig)
52NB
(Ae)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5polymer11613321.61UniProt (F1SLY2)Sus scrofa (Pig)
53OB
(Af)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6polymer12814953.31UniProt (F1SRG2)Sus scrofa (Pig)
54PB
(Ag)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11polymer14114686.91UniProt (I3LGM4)
Pfam (PF02466)
Sus scrofa (Pig)
55SB
(Aj)
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10polymer17620944.81UniProt (I3LDC3)
Pfam (PF10249)
Sus scrofa (Pig)
56TB
(Ak)
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9polymer17821733.71UniProt (K7GSE5)
Pfam (PF05347)
Sus scrofa (Pig)
57UB
(Al)
NADH dehydrogenase [ubiquinone] 1 subunit C2polymer12214327.71UniProt (F1STY1)Sus scrofa (Pig)
58VB
(Am)
NADH dehydrogenase [ubiquinone] 1 subunit C1polymer768630.01UniProt (F1RRC9)
Pfam (PF14962)
Sus scrofa (Pig)
59WB
(An)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8polymer17220064.11UniProt (F1SLR1)
Pfam (PF06747)
Sus scrofa (Pig)
60BC, FC, ZB
(Aq, As, Aw)
NADH dehydrogenase [ubiquinone] 1 unknown subunit fragmentpolymer766486.03Sus scrofa (Pig)
61AC
(Ar)
NADH dehydrogenase [ubiquinone] 1 unknown subunit fragmentpolymer342911.61Sus scrofa (Pig)
62CC
(At)
NADH dehydrogenase [ubiquinone] 1 unknown subunit fragmentpolymer171464.81Sus scrofa (Pig)
63DC
(Au)
NADH dehydrogenase [ubiquinone] 1 unknown subunit fragmentpolymer131124.41Sus scrofa (Pig)
64GC, HC, KC, LC
(C, O)
PROTOPORPHYRIN IX CONTAINING FEnon-polymer616.54Chemie (HEM)
65IC, MC
(D, P)
HEME Cnon-polymer618.52Chemie (HEC)
66JC, NC, QC, WC
(E, Q, Y, d)
FE2/S2 (INORGANIC) CLUSTERnon-polymer175.84Chemie (FES)
67OC, PC, RC, SC, TC...
(Y, a, b, c)
IRON/SULFUR CLUSTERnon-polymer351.66Chemie (SF4)
68VC
(c)
FLAVIN MONONUCLEOTIDEnon-polymer456.31Chemie (FMN)
69XC
(p)
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATEnon-polymer745.41Chemie (NDP)
70YC
(3)
ZINC IONnon-polymer65.41Chemie (ZN)
71AD, ZC
(y)
HEME-Anon-polymer852.82Chemie (HEA)
72BD, DD, ED
(y, z)
COPPER (II) IONnon-polymer63.53Chemie (CU)
73CD
(y)
MAGNESIUM IONnon-polymer24.31Chemie (MG)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains84
Total formula weight1732067.0
Non-Polymers*Number of molecules25
Total formula weight9703.9
All*Total formula weight1741770.9
*Water molecules are not included.

246704

PDB entries from 2025-12-24

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