5GGP
Crystal structure of N-terminal domain of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase in complex with GlcNAc-beta1,2-Man-peptide
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 | polymer | 164 | 17623.0 | 2 | UniProt (Q8WZA1) Pfam (PF15711) | Homo sapiens (Human) | POMGnT1,UDP-GlcNAc:alpha-D-mannoside beta-1,2-N-acetylglucosaminyltransferase I.2,GnT I.2 |
| 2 | C, D (C, D) | 10-mer Peptide from Dystroglycan | polymer | 10 | 927.1 | 2 | UniProt (Q14118) | Homo sapiens | Dystrophin-associated glycoprotein 1 |
| 3 | E, F (E, F) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose | branched | 383.3 | 2 | In PDB GlyTouCan (G85856KC) | |||
| 4 | G, H, I, J, K (A, B) | SODIUM ION | non-polymer | 23.0 | 5 | Chemie (NA) | |||
| 5 | L, M, N, O (A, B, C, D) | water | water | 18.0 | 278 | Chemie (HOH) |
Sequence modifications
A, B: 92 - 250 (UniProt: Q8WZA1)
| PDB | External Database | Details |
|---|---|---|
| Gly 87 | - | expression tag |
| Pro 88 | - | expression tag |
| Leu 89 | - | expression tag |
| Gly 90 | - | expression tag |
| Ser 91 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 37100.1 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 766.7 | |
| Non-Polymers* | Number of molecules | 5 |
| Total formula weight | 114.9 | |
| All* | Total formula weight | 37981.8 |
