5GAF
RNC in complex with SRP
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | 1 | SRP 4.5S RNA | polymer | 113 | 36502.7 | 1 | GenBank (899721066) | Escherichia coli | |
| 2 | 2 | tRNA CCAend | polymer | 3 | 894.6 | 1 | Escherichia coli | ||
| 3 | A | 23S ribosomal RNA | polymer | 2883 | 934972.2 | 1 | GenBank (170787319) | Escherichia coli | 23S rRNA |
| 4 | B | 5S ribosomal RNA | polymer | 120 | 38790.1 | 1 | GenBank (817146391) | Escherichia coli | |
| 5 | C | 50S ribosomal protein L2 | polymer | 271 | 29663.2 | 1 | UniProt (P60422) Pfam (PF00181) Pfam (PF03947) In PDB | Escherichia coli | ribosomal protein uL2 |
| 6 | D | 50S ribosomal protein L3 | polymer | 209 | 22277.5 | 1 | UniProt (P60438) Pfam (PF00297) In PDB | Escherichia coli | ribosomal protein uL3 |
| 7 | E | 50S ribosomal protein L4 | polymer | 201 | 22121.6 | 1 | UniProt (P60723) Pfam (PF00573) In PDB | Escherichia coli | |
| 8 | F | 50S ribosomal protein L5 | polymer | 177 | 20073.2 | 1 | UniProt (P62399) Pfam (PF00281) Pfam (PF00673) In PDB | Escherichia coli | |
| 9 | G | 50S ribosomal protein L6 | polymer | 176 | 18801.6 | 1 | UniProt (P0AG55) Pfam (PF00347) In PDB | Escherichia coli | |
| 10 | H | 50S ribosomal protein L9 | polymer | 149 | 15789.0 | 1 | UniProt (P0A7R1) Pfam (PF03948) Pfam (PF01281) In PDB | Escherichia coli | |
| 11 | I | 50S ribosomal protein L10 | polymer | 125 | 13479.6 | 1 | UniProt (P0A7J3) Pfam (PF00466) In PDB | Escherichia coli | 50S ribosomal protein L8 |
| 12 | J | 50S ribosomal protein L11 | polymer | 134 | 14020.3 | 1 | UniProt (P0A7J7) Pfam (PF03946) Pfam (PF00298) In PDB | Escherichia coli | |
| 13 | K | 50S ribosomal protein L13 | polymer | 142 | 16050.6 | 1 | UniProt (P0AA10) Pfam (PF00572) In PDB | Escherichia coli | |
| 14 | L | 50S ribosomal protein L14 | polymer | 123 | 13565.1 | 1 | UniProt (P0ADY3) Pfam (PF00238) In PDB | Escherichia coli | |
| 15 | M | 50S ribosomal protein L15 | polymer | 144 | 15008.5 | 1 | UniProt (P02413) Pfam (PF00828) In PDB | Escherichia coli | ribosomal protein uL15 |
| 16 | N | 50S ribosomal protein L16 | polymer | 136 | 15312.3 | 1 | UniProt (P0ADY7) Pfam (PF00252) In PDB | Escherichia coli | |
| 17 | O | 50S ribosomal protein L17 | polymer | 125 | 14193.5 | 1 | UniProt (P0AG44) Pfam (PF01196) In PDB | Escherichia coli | |
| 18 | P | 50S ribosomal protein L18 | polymer | 117 | 12794.7 | 1 | UniProt (P0C018) Pfam (PF00861) In PDB | Escherichia coli | ribosomal protein uL18 |
| 19 | Q | 50S ribosomal protein L19 | polymer | 114 | 13028.1 | 1 | UniProt (P0A7K6) Pfam (PF01245) In PDB | Escherichia coli | ribosomal protein bL19 |
| 20 | R | 50S ribosomal protein L20 | polymer | 117 | 13396.8 | 1 | UniProt (P0A7L3) Pfam (PF00453) In PDB | Escherichia coli | |
| 21 | S | 50S ribosomal protein L21 | polymer | 103 | 11586.4 | 1 | UniProt (P0AG48) Pfam (PF00829) In PDB | Escherichia coli | |
| 22 | T | 50S ribosomal protein L22 | polymer | 110 | 12253.4 | 1 | UniProt (P61175) Pfam (PF00237) In PDB | Escherichia coli | ribosomal protein uL22 |
| 23 | U | 50S ribosomal protein L23 | polymer | 95 | 10776.7 | 1 | UniProt (P0ADZ0) Pfam (PF00276) In PDB | Escherichia coli | ribosomal protein uL23 |
| 24 | V | 50S ribosomal protein L24 | polymer | 102 | 11078.9 | 1 | UniProt (P60624) Pfam (PF00467) Pfam (PF17136) In PDB | Escherichia coli | ribosomal protein uL24 |
| 25 | W | 50S ribosomal protein L25 | polymer | 94 | 10713.5 | 1 | UniProt (P68919) Pfam (PF01386) In PDB | Escherichia coli | |
| 26 | X | 50S ribosomal protein L27 | polymer | 76 | 8275.5 | 1 | UniProt (P0A7L8) Pfam (PF01016) In PDB | Escherichia coli | ribosomal protein bL27 |
| 27 | Y | 50S ribosomal protein L28 | polymer | 77 | 8896.4 | 1 | UniProt (P0A7M2) Pfam (PF00830) In PDB | Escherichia coli | ribosomal protein bL28 |
| 28 | Z | 50S ribosomal protein L29 | polymer | 62 | 7155.3 | 1 | UniProt (P0A7M6) Pfam (PF00831) In PDB | Escherichia coli | |
| 29 | a | 50S ribosomal protein L30 | polymer | 58 | 6423.6 | 1 | UniProt (P0AG51) Pfam (PF00327) In PDB | Escherichia coli | ribosomal protein uL30 |
| 30 | b | 50S ribosomal protein L32 | polymer | 56 | 6332.2 | 1 | UniProt (P0A7N4) Pfam (PF01783) In PDB | Escherichia coli | ribosomal protein bL32 |
| 31 | c | 50S ribosomal protein L33 | polymer | 51 | 5928.0 | 1 | UniProt (P0A7N9) Pfam (PF00471) In PDB | Escherichia coli | ribosomal protein bL33 |
| 32 | d | 50S ribosomal protein L34 | polymer | 46 | 5397.5 | 1 | UniProt (P0A7P5) Pfam (PF00468) In PDB | Escherichia coli | ribosomal protein bL34 |
| 33 | e | 50S ribosomal protein L35 | polymer | 64 | 7181.8 | 1 | UniProt (P0A7Q1) Pfam (PF01632) In PDB | Escherichia coli | Ribosomal protein A,ribosomal protein bL35 |
| 34 | f | 50S ribosomal protein L36 | polymer | 38 | 4377.4 | 1 | UniProt (P0A7Q6) Pfam (PF00444) In PDB | Escherichia coli | Ribosomal protein B, ribosomal protein bL36 |
| 35 | i | Signal recognition particle protein | polymer | 398 | 43545.9 | 1 | Pfam (PF02881) Pfam (PF00448) Pfam (PF02978) UniProt (by SIFTS) (P0AGD7) In PDB | Escherichia coli | Fifty-four homolog,Ffh,p48 |
| 36 | k | 1A9L SS | polymer | 18 | 1981.5 | 1 | UniProt (by SIFTS) (P00634) In PDB | Escherichia coli | |
| 37 | A, B, 2, C, D... | MAGNESIUM ION | non-polymer | 24.3 | 431 | Chemie (MG) | |||
| 38 | f | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
| 39 | i | PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | non-polymer | 522.2 | 1 | Chemie (GNP) |
Sequence modifications
I: 2 - 126 (UniProt: P0A7J3)
| PDB | External Database | Details |
|---|---|---|
| Val 85 | Ser 85 | conflict |
| Thr 86 | Met 86 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 36 |
| Total formula weight | 1442638.9 | |
| Non-Polymers* | Number of molecules | 433 |
| Total formula weight | 11063.1 | |
| All* | Total formula weight | 1453702.0 |
