5FMD
Structure of D80A-fructofuranosidase from Xanthophyllomyces dendrorhous complexed with nystose
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | BETA-FRUCTOFURANOSIDASE | polymer | 665 | 72021.2 | 2 | UniProt (J7HDY4) Pfam (PF00251) Pfam (PF08244) | XANTHOPHYLLOMYCES DENDRORHOUS (PHAFFIA RHODOZYMA) | |
| 2 | C (C) | beta-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1235.1 | 1 | In PDB GlyTouCan (G33490PH) | |||
| 3 | D, G (D, G) | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1721.5 | 2 | In PDB GlyTouCan (G40702WU) | |||
| 4 | E, H (E, H) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 2 | In PDB GlyTouCan (G42666HT) | |||
| 5 | F (F) | alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1073.0 | 1 | In PDB GlyTouCan (G09724ZC) | |||
| 6 | I, J (I, J) | beta-D-fructofuranose-(2-1)-beta-D-fructofuranose-(2-1)-beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose | branched | 666.6 | 2 | In PDB BIRD (PRD_900044) | nystose | ||
| 7 | AA, BA, CA, DA, EA... (B, A) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 27 | Chemie (NAG) | |||
| 8 | LA, MA (A, B) | water | water | 18.0 | 1444 | Chemie (HOH) |
Sequence modifications
A, B: 1 - 665 (UniProt: J7HDY4)
| PDB | External Database | Details |
|---|---|---|
| Ala 663 | Ser 663 | conflict |
| Tyr 665 | Arg 665 | conflict |
| Ala 80 | Asp 80 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 144042.4 | |
| Branched | Number of molecules | 8 |
| Total formula weight | 7933.1 | |
| Non-Polymers* | Number of molecules | 27 |
| Total formula weight | 5972.6 | |
| All* | Total formula weight | 157948.1 |
