5FI8
Crystal structure of plasmodium falciparum dihydroorotate dehydrogenase bounded with DSM422 (Tetrahydro-2-naphthyl and 2-indanyl triazolopyrimidine)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | Dihydroorotate dehydrogenase (quinone), mitochondrial | polymer | 401 | 45385.9 | 1 | UniProt (Q08210) Pfam (PF01180) In PDB | Plasmodium falciparum (isolate 3D7) | DHOdehase,Dihydroorotate oxidase |
| 2 | A | 2-[1,1-bis(fluoranyl)ethyl]-~{N}-[(2~{S})-7-bromanyl-1,2,3,4-tetrahydronaphthalen-2-yl]-5-methyl-[1,2,4]triazolo[1,5-a]pyrimidin-7-amine | non-polymer | 422.3 | 1 | Chemie (5Y5) | |||
| 3 | A | FLAVIN MONONUCLEOTIDE | non-polymer | 456.3 | 1 | Chemie (FMN) | |||
| 4 | A | OROTIC ACID | non-polymer | 156.1 | 1 | Chemie (ORO) | |||
| 5 | A | LAURYL DIMETHYLAMINE-N-OXIDE | non-polymer | 229.4 | 1 | Chemie (LDA) | |||
| 6 | water | water | 18.0 | 65 | Chemie (HOH) |
Sequence modifications
A: 158 - 569 (UniProt: Q08210)
| PDB | External Database | Details |
|---|---|---|
| Met 139 | - | initiating methionine |
| Gly 140 | - | expression tag |
| His 141 | - | expression tag |
| His 142 | - | expression tag |
| His 143 | - | expression tag |
| His 144 | - | expression tag |
| His 145 | - | expression tag |
| His 146 | - | expression tag |
| Ala 147 | - | expression tag |
| Glu 148 | - | expression tag |
| Asn 149 | - | expression tag |
| Leu 150 | - | expression tag |
| Tyr 151 | - | expression tag |
| Phe 152 | - | expression tag |
| Gln 153 | - | expression tag |
| Gly 154 | - | expression tag |
| Ala 155 | - | expression tag |
| Asp 156 | - | expression tag |
| Pro 157 | - | expression tag |
| - | Ser 384 | deletion |
| - | Thr 385 | deletion |
| - | Tyr 386 | deletion |
| - | Asn 387 | deletion |
| - | Glu 388 | deletion |
| - | Asp 389 | deletion |
| - | Asn 390 | deletion |
| - | Lys 391 | deletion |
| - | Ile 392 | deletion |
| - | Val 393 | deletion |
| - | Glu 394 | deletion |
| - | Lys 395 | deletion |
| - | Lys 396 | deletion |
| - | Asn 397 | deletion |
| - | Asn 398 | deletion |
| - | Phe 399 | deletion |
| - | Asn 400 | deletion |
| - | Lys 401 | deletion |
| - | Asn 402 | deletion |
| - | Asn 403 | deletion |
| - | Ser 404 | deletion |
| - | His 405 | deletion |
| - | Met 406 | deletion |
| - | Met 407 | deletion |
| - | Lys 408 | deletion |
| - | Asp 409 | deletion |
| - | Ala 410 | deletion |
| - | Lys 411 | deletion |
| - | Asp 412 | deletion |
| - | Asn 413 | deletion |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 45385.9 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 1264.1 | |
| All* | Total formula weight | 46650.0 |
