5FC5
Murine SMPDL3A in complex with phosphocholine
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Acid sphingomyelinase-like phosphodiesterase 3a | polymer | 433 | 48997.3 | 1 | UniProt (P70158) Pfam (PF00149) Pfam (PF19272) In PDB | Mus musculus (Mouse) | ASM-like phosphodiesterase 3a |
2 | B, E | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 2 | In PDB GlyTouCan (G21290RB) | |||
3 | C | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
4 | D | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 1 | In PDB GlyTouCan (G22768VO) | |||
5 | A | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
6 | A | PHOSPHOCHOLINE | non-polymer | 184.2 | 1 | Chemie (PC) | |||
7 | A | GLYCEROL | non-polymer | 92.1 | 7 | Chemie (GOL) | |||
8 | water | water | 18.0 | 488 | Chemie (HOH) |
Sequence modifications
A: 23 - 445 (UniProt: P70158)
PDB | External Database | Details |
---|---|---|
Asp 13 | - | expression tag |
Arg 14 | - | expression tag |
His 15 | - | expression tag |
His 16 | - | expression tag |
His 17 | - | expression tag |
His 18 | - | expression tag |
His 19 | - | expression tag |
His 20 | - | expression tag |
Lys 21 | - | expression tag |
Leu 22 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 1 |
Total formula weight | 48997.3 | |
Branched | Number of molecules | 4 |
Total formula weight | 2476.3 | |
Non-Polymers* | Number of molecules | 10 |
Total formula weight | 959.6 | |
All* | Total formula weight | 52433.2 |