5F97
Blood group antigen binding adhesin BabA of Helicobacter pylori strain A730 in complex with blood group A type 1 hexasaccharide
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C, D | Adhesin binding fucosylated histo-blood group antigen,Adhesin,Adhesin binding fucosylated histo-blood group antigen | polymer | 469 | 49957.8 | 4 | UniProt (O52269) UniProt (Q6DSX7) Pfam (PF18304) In PDB | Helicobacter pylori | |
2 | E, F, G, H | Nanbody Nb-ER19 | polymer | 120 | 13260.9 | 4 | Lama glama (Llama) | ||
3 | I, J, K, L | alpha-L-fucopyranose-(1-2)-[2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)]beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | branched | 1057.0 | 4 | In PDB GlyTouCan (G82858KU) | |||
4 | water | water | 18.0 | 75 | Chemie (HOH) |
Sequence modifications
A, B, C, D: 25 - 180 (UniProt: O52269)
A, B, C, D: 181 - 257 (UniProt: Q6DSX7)
A, B, C, D: 258 - 463 (UniProt: O52269)
PDB | External Database | Details |
---|---|---|
Ala 3 | - | expression tag |
Ser 4 | - | expression tag |
Trp 5 | - | expression tag |
Ser 6 | - | expression tag |
His 7 | - | expression tag |
Pro 8 | - | expression tag |
Gln 9 | - | expression tag |
Phe 10 | - | expression tag |
Glu 11 | - | expression tag |
Lys 12 | - | expression tag |
Ser 13 | - | expression tag |
Gly 14 | - | expression tag |
Gly 15 | - | expression tag |
Gly 16 | - | expression tag |
Gly 17 | - | expression tag |
Gly 18 | - | expression tag |
Leu 19 | - | expression tag |
Val 20 | - | expression tag |
Pro 21 | - | expression tag |
Arg 22 | - | expression tag |
Gly 23 | - | expression tag |
Ser 24 | - | expression tag |
A, B, C, D: 258 - 463 (UniProt: O52269)
PDB | External Database | Details |
---|---|---|
Gly 464 | - | expression tag |
Ser 465 | - | expression tag |
His 466 | - | expression tag |
His 467 | - | expression tag |
His 468 | - | expression tag |
His 469 | - | expression tag |
His 470 | - | expression tag |
His 471 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 8 |
Total formula weight | 252874.6 | |
Branched | Number of molecules | 4 |
Total formula weight | 4227.9 | |
All* | Total formula weight | 257102.5 |