5F93
Blood group antigen binding adhesin BabA of Helicobacter pylori strain A730 in complex with blood group H Lewis b hexasaccharide
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D (A, B, E, G) | Adhesin binding fucosylated histo-blood group antigen,Adhesin,Adhesin binding fucosylated histo-blood group antigen | polymer | 469 | 49957.8 | 4 | UniProt (O52269) UniProt (Q6DSX7) Pfam (PF18304) | Helicobacter pylori | |
| 2 | E, F, G, H (C, D, F, H) | Nanobody Nb-ER19 | polymer | 120 | 13260.9 | 4 | Lama glama (Llama) | ||
| 3 | I, J, K, L (I, J, K, L) | alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-3)-[alpha-L-fucopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose | branched | 999.9 | 4 | In PDB GlyTouCan (G30212HV) | |||
| 4 | M, N, O, P, Q... (A, B, E, G, C...) | water | water | 18.0 | 42 | Chemie (HOH) |
Sequence modifications
A, B, E, G: 25 - 180 (UniProt: O52269)
A, B, E, G: 181 - 257 (UniProt: Q6DSX7)
A, B, E, G: 258 - 463 (UniProt: O52269)
| PDB | External Database | Details |
|---|---|---|
| Ala 3 | - | expression tag |
| Ser 4 | - | expression tag |
| Trp 5 | - | expression tag |
| Ser 6 | - | expression tag |
| His 7 | - | expression tag |
| Pro 8 | - | expression tag |
| Gln 9 | - | expression tag |
| Phe 10 | - | expression tag |
| Glu 11 | - | expression tag |
| Lys 12 | - | expression tag |
| Ser 13 | - | expression tag |
| Gly 14 | - | expression tag |
| Gly 15 | - | expression tag |
| Gly 16 | - | expression tag |
| Gly 17 | - | expression tag |
| Gly 18 | - | expression tag |
| Leu 19 | - | expression tag |
| Val 20 | - | expression tag |
| Pro 21 | - | expression tag |
| Arg 22 | - | expression tag |
| Gly 23 | - | expression tag |
| Ser 24 | - | expression tag |
A, B, E, G: 258 - 463 (UniProt: O52269)
| PDB | External Database | Details |
|---|---|---|
| Gly 464 | - | expression tag |
| Ser 465 | - | expression tag |
| His 466 | - | expression tag |
| His 467 | - | expression tag |
| His 468 | - | expression tag |
| His 469 | - | expression tag |
| His 470 | - | expression tag |
| His 471 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 252874.6 | |
| Branched | Number of molecules | 4 |
| Total formula weight | 3999.6 | |
| All* | Total formula weight | 256874.3 |
