5F3C
Crystal structure of human KDM4A in complex with compound 52d
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D (A, B, C, D) | Lysine-specific demethylase 4A | polymer | 360 | 41854.6 | 4 | UniProt (O75164) Pfam (PF02375) Pfam (PF02373) | Homo sapiens (Human) | JmjC domain-containing histone demethylation protein 3A,Jumonji domain-containing protein 2A |
| 2 | E, F, M, N, S... (A, B, C, D) | ZINC ION | non-polymer | 65.4 | 8 | Chemie (ZN) | |||
| 3 | G, O, U, Z (A, B, C, D) | 8-[4-[2-[(4-fluorophenyl)methyl-methyl-amino]ethyl]pyrazol-1-yl]-3~{H}-pyrido[3,4-d]pyrimidin-4-one | non-polymer | 378.4 | 4 | Chemie (5U8) | |||
| 4 | AA, BA, H, I, J... (D, A, B, C) | DIMETHYL SULFOXIDE | non-polymer | 78.1 | 11 | Chemie (DMS) | |||
| 5 | L (A) | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) | |||
| 6 | CA (D) | CHLORIDE ION | non-polymer | 35.5 | 1 | Chemie (CL) | |||
| 7 | DA, EA, FA, GA (A, B, C, D) | water | water | 18.0 | 1041 | Chemie (HOH) |
Sequence modifications
A, B, C, D: 1 - 359 (UniProt: O75164)
| PDB | External Database | Details |
|---|---|---|
| Ser 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 167418.5 | |
| Non-Polymers* | Number of molecules | 25 |
| Total formula weight | 3023.9 | |
| All* | Total formula weight | 170442.4 |
