5ES4
RE-REFINEMENT OF INTEGRIN ALPHAXBETA2 ECTODOMAIN IN THE CLOSED/BENT CONFORMATION
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, C, E, G | Integrin alpha-X | polymer | 1137 | 125606.4 | 4 | UniProt (P20702) Pfam (PF00092) Pfam (PF01839) Pfam (PF08441) Pfam (PF20805) Pfam (PF21520) In PDB | Homo sapiens (Human) | CD11 antigen-like family member C,Leu M5,Leukocyte adhesion glycoprotein p150,95 alpha chain,Leukocyte adhesion receptor p150,95 |
2 | B, D, F, H | Integrin beta-2 | polymer | 727 | 80630.7 | 4 | UniProt (P05107) Pfam (PF17205) Pfam (PF00362) Pfam (PF07965) In PDB | Homo sapiens (Human) | Cell surface adhesion glycoproteins LFA-1/CR3/p150,95 subunit beta,Complement receptor C3 subunit beta |
3 | I | alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 1 | In PDB GlyTouCan (G94626GC) | |||
4 | J | alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1721.5 | 1 | In PDB GlyTouCan (G85238RP) | |||
5 | K, T, X | alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 3 | In PDB GlyTouCan (G22573RC) | |||
6 | L | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
7 | M | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
8 | N, S | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 2 | In PDB GlyTouCan (G81315DD) | |||
9 | O | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1235.1 | 1 | In PDB GlyTouCan (G92805XC) | |||
10 | P | alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 1 | In PDB GlyTouCan (G10756ZZ) | |||
11 | Q, U, V | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 3 | In PDB GlyTouCan (G22768VO) | |||
12 | R | alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1073.0 | 1 | In PDB GlyTouCan (G34442SS) | |||
13 | W | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1235.1 | 1 | In PDB GlyTouCan (G23799GS) | |||
14 | Y | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 1 | In PDB GlyTouCan (G42227JK) | |||
15 | A, F, G, B, C... | CALCIUM ION | non-polymer | 40.1 | 16 | Chemie (CA) | |||
16 | A | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
17 | E, F, A, B, G... | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 27 | Chemie (NAG) | |||
18 | water | water | 18.0 | 67 | Chemie (HOH) |
Sequence modifications
A, C, E, G: 1 - 1084 (UniProt: P20702)
B, D, F, H: 1 - 674 (UniProt: P05107)
PDB | External Database | Details |
---|---|---|
Gly 1085 | - | expression tag |
Cys 1086 | - | expression tag |
Gly 1087 | - | expression tag |
Gly 1088 | - | expression tag |
Leu 1089 | - | expression tag |
Glu 1090 | - | expression tag |
Asn 1091 | - | expression tag |
Leu 1092 | - | expression tag |
Tyr 1093 | - | expression tag |
Phe 1094 | - | expression tag |
Gln 1095 | - | expression tag |
Gly 1096 | - | expression tag |
Gly 1097 | - | expression tag |
Glu 1098 | - | expression tag |
Asn 1099 | - | expression tag |
Ala 1100 | - | expression tag |
Gln 1101 | - | expression tag |
Cys 1102 | - | expression tag |
Glu 1103 | - | expression tag |
Lys 1104 | - | expression tag |
Glu 1105 | - | expression tag |
Leu 1106 | - | expression tag |
Gln 1107 | - | expression tag |
Ala 1108 | - | expression tag |
Leu 1109 | - | expression tag |
Glu 1110 | - | expression tag |
Lys 1111 | - | expression tag |
Glu 1112 | - | expression tag |
Asn 1113 | - | expression tag |
Ala 1114 | - | expression tag |
Gln 1115 | - | expression tag |
Leu 1116 | - | expression tag |
Glu 1117 | - | expression tag |
Trp 1118 | - | expression tag |
Glu 1119 | - | expression tag |
Leu 1120 | - | expression tag |
Gln 1121 | - | expression tag |
Ala 1122 | - | expression tag |
Leu 1123 | - | expression tag |
Glu 1124 | - | expression tag |
Lys 1125 | - | expression tag |
Glu 1126 | - | expression tag |
Leu 1127 | - | expression tag |
Ala 1128 | - | expression tag |
Gln 1129 | - | expression tag |
Trp 1130 | - | expression tag |
Ser 1131 | - | expression tag |
His 1132 | - | expression tag |
Pro 1133 | - | expression tag |
Gln 1134 | - | expression tag |
Phe 1135 | - | expression tag |
Glu 1136 | - | expression tag |
Lys 1137 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Asp 675 | - | expression tag |
Gly 676 | - | expression tag |
Cys 677 | - | expression tag |
Gly 678 | - | expression tag |
Leu 679 | - | expression tag |
Glu 680 | - | expression tag |
Asn 681 | - | expression tag |
Leu 682 | - | expression tag |
Tyr 683 | - | expression tag |
Phe 684 | - | expression tag |
Gln 685 | - | expression tag |
Gly 686 | - | expression tag |
Gly 687 | - | expression tag |
Lys 688 | - | expression tag |
Asn 689 | - | expression tag |
Ala 690 | - | expression tag |
Gln 691 | - | expression tag |
Cys 692 | - | expression tag |
Lys 693 | - | expression tag |
Lys 694 | - | expression tag |
Lys 695 | - | expression tag |
Leu 696 | - | expression tag |
Gln 697 | - | expression tag |
Ala 698 | - | expression tag |
Leu 699 | - | expression tag |
Lys 700 | - | expression tag |
Lys 701 | - | expression tag |
Lys 702 | - | expression tag |
Asn 703 | - | expression tag |
Ala 704 | - | expression tag |
Gln 705 | - | expression tag |
Leu 706 | - | expression tag |
Lys 707 | - | expression tag |
Trp 708 | - | expression tag |
Lys 709 | - | expression tag |
Leu 710 | - | expression tag |
Gln 711 | - | expression tag |
Ala 712 | - | expression tag |
Leu 713 | - | expression tag |
Lys 714 | - | expression tag |
Lys 715 | - | expression tag |
Lys 716 | - | expression tag |
Leu 717 | - | expression tag |
Ala 718 | - | expression tag |
Gln 719 | - | expression tag |
Gly 720 | - | expression tag |
Gly 721 | - | expression tag |
His 722 | - | expression tag |
His 723 | - | expression tag |
His 724 | - | expression tag |
His 725 | - | expression tag |
His 726 | - | expression tag |
His 727 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 8 |
Total formula weight | 824948.5 | |
Branched | Number of molecules | 17 |
Total formula weight | 15484.0 | |
Non-Polymers* | Number of molecules | 44 |
Total formula weight | 6638.2 | |
All* | Total formula weight | 847070.7 |