5ERP
Crystal structure of human Desmocollin-2 ectodomain fragment EC2-5
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B | Desmocollin-2 | polymer | 451 | 50332.0 | 2 | UniProt (Q02487) Pfam (PF00028) In PDB | Homo sapiens (Human) | Cadherin family member 2,Desmocollin-3,Desmosomal glycoprotein II,Desmosomal glycoprotein III |
2 | C, D, E | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 3 | In PDB GlyTouCan (G81315DD) | |||
3 | B, A | alpha-D-mannopyranose | non-polymer | 180.2 | 8 | Chemie (MAN) | |||
4 | A, B | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 3 | Chemie (NAG) | |||
5 | B, A | CALCIUM ION | non-polymer | 40.1 | 21 | Chemie (CA) | |||
6 | B, A | SULFATE ION | non-polymer | 96.1 | 2 | Chemie (SO4) | |||
7 | B, A | 1,2-ETHANEDIOL | non-polymer | 62.1 | 5 | Chemie (EDO) | |||
8 | water | water | 18.0 | 111 | Chemie (HOH) |
Sequence modifications
A, B: 101 - 545 (UniProt: Q02487)
PDB | External Database | Details |
---|---|---|
His 546 | - | expression tag |
His 547 | - | expression tag |
His 548 | - | expression tag |
His 549 | - | expression tag |
His 550 | - | expression tag |
His 551 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 100664.0 | |
Branched | Number of molecules | 3 |
Total formula weight | 2246.0 | |
Non-Polymers* | Number of molecules | 39 |
Total formula weight | 3449.0 | |
All* | Total formula weight | 106359.0 |