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5ELX

S. cerevisiae Dbp5 bound to RNA and mant-ADP BeF3

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
ATP-dependent RNA helicase DBP5polymer39143811.61UniProt (A6ZNQ1)
Pfam (PF00270)
Pfam (PF00271)
UniProt (by SIFTS) (P20449)
Saccharomyces cerevisiae (strain YJM789) (Baker's yeast)DEAD box protein 5,Helicase CA5/6,Ribonucleic acid-trafficking protein 8
2B
(B)
RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3')polymer61792.01Saccharomyces cerevisiae (strain YJM789)
3C
(A)
[(2~{R},3~{R},4~{R},5~{S})-2-(6-aminopurin-9-yl)-4-oxidanyl-5-[[oxidanyl(phosphonooxy)phosphoryl]oxymethyl]oxolan-3-yl] 2-(methylamino)benzoatenon-polymer560.31Chemie (M2A)
4D, H
(A)
MAGNESIUM IONnon-polymer24.32Chemie (MG)
5E
(A)
BERYLLIUM TRIFLUORIDE IONnon-polymer66.01Chemie (BEF)
6F, G
(A)
NITRATE IONnon-polymer62.02Chemie (NO3)
7I, J
(A, B)
waterwater18.0325Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight45603.6
Non-Polymers*Number of molecules6
Total formula weight799.0
All*Total formula weight46402.6
*Water molecules are not included.

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