5EFJ
Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with HC toxin
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | D | Hdac6 protein | polymer | 364 | 40285.5 | 1 | UniProt (A7YT55) Pfam (PF00850) UniProt (by SIFTS) (F8W4B7) In PDB | Danio rerio (Zebrafish) | histone deacetylase 6 |
2 | F | HC toxin | polymer | 4 | 472.5 | 1 | BIRD (PRD_002204) | Bipolaris zeicola (Helminthosporium carbonum) | Toxin I |
3 | D | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
4 | D | POTASSIUM ION | non-polymer | 39.1 | 2 | Chemie (K) | |||
5 | D | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) | |||
6 | D | NITRATE ION | non-polymer | 62.0 | 2 | Chemie (NO3) | |||
7 | D | 1,2-ETHANEDIOL | non-polymer | 62.1 | 3 | Chemie (EDO) | |||
8 | water | water | 18.0 | 293 | Chemie (HOH) |
Sequence modifications
D: 440 - 798 (UniProt: A7YT55)
PDB | External Database | Details |
---|---|---|
Ser 435 | - | expression tag |
Asn 436 | - | expression tag |
Ala 437 | - | expression tag |
Gly 438 | - | expression tag |
Gly 439 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 40758.0 | |
Non-Polymers* | Number of molecules | 9 |
Total formula weight | 545.9 | |
All* | Total formula weight | 41303.9 |