5EFI
Crystal structure of mouse CD1d in complex with the p99p lipopeptide
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Antigen-presenting glycoprotein CD1d1 | polymer | 285 | 32609.6 | 1 | UniProt (P11609) Pfam (PF16497) Pfam (PF07654) | Mus musculus (Mouse) | |
| 2 | B (B) | Beta-2-microglobulin | polymer | 99 | 11660.4 | 1 | UniProt (P01887) Pfam (PF07654) | Mus musculus (Mouse) | |
| 3 | C (C) | p99p | polymer | 22 | 2816.2 | 1 | Mus | ||
| 4 | D (D) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
| 5 | E (E) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1057.0 | 1 | In PDB GlyTouCan (G82348BZ) | |||
| 6 | F (A) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) | |||
| 7 | G (A) | CITRIC ACID | non-polymer | 192.1 | 1 | Chemie (CIT) | |||
| 8 | H (A) | SODIUM ION | non-polymer | 23.0 | 1 | Chemie (NA) | |||
| 9 | I (C) | PALMITIC ACID | non-polymer | 256.4 | 1 | Chemie (PLM) | |||
| 10 | J (C) | OCTANOIC ACID (CAPRYLIC ACID) | non-polymer | 144.2 | 1 | Chemie (OCA) | |||
| 11 | K, L, M (A, B, C) | water | water | 18.0 | 204 | Chemie (HOH) |
Sequence modifications
A: 1 - 279 (UniProt: P11609)
| PDB | External Database | Details |
|---|---|---|
| His 280 | - | expression tag |
| His 281 | - | expression tag |
| His 282 | - | expression tag |
| His 283 | - | expression tag |
| His 284 | - | expression tag |
| His 285 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 47086.1 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 1481.4 | |
| Non-Polymers* | Number of molecules | 5 |
| Total formula weight | 837.0 | |
| All* | Total formula weight | 49404.5 |
