5EFI
Crystal structure of mouse CD1d in complex with the p99p lipopeptide
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Antigen-presenting glycoprotein CD1d1 | polymer | 285 | 32609.6 | 1 | UniProt (P11609) Pfam (PF16497) Pfam (PF07654) In PDB | Mus musculus (Mouse) | |
2 | B | Beta-2-microglobulin | polymer | 99 | 11660.4 | 1 | UniProt (P01887) Pfam (PF07654) In PDB | Mus musculus (Mouse) | |
3 | C | p99p | polymer | 22 | 2816.2 | 1 | Mus | ||
4 | D | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
5 | E | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1057.0 | 1 | In PDB GlyTouCan (G82348BZ) | |||
6 | A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) | |||
7 | A | CITRIC ACID | non-polymer | 192.1 | 1 | Chemie (CIT) | |||
8 | A | SODIUM ION | non-polymer | 23.0 | 1 | Chemie (NA) | |||
9 | C | PALMITIC ACID | non-polymer | 256.4 | 1 | Chemie (PLM) | |||
10 | C | OCTANOIC ACID (CAPRYLIC ACID) | non-polymer | 144.2 | 1 | Chemie (OCA) | |||
11 | water | water | 18.0 | 204 | Chemie (HOH) |
Sequence modifications
A: 1 - 279 (UniProt: P11609)
PDB | External Database | Details |
---|---|---|
His 280 | - | expression tag |
His 281 | - | expression tag |
His 282 | - | expression tag |
His 283 | - | expression tag |
His 284 | - | expression tag |
His 285 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 47086.1 | |
Branched | Number of molecules | 2 |
Total formula weight | 1481.4 | |
Non-Polymers* | Number of molecules | 5 |
Total formula weight | 837.0 | |
All* | Total formula weight | 49404.5 |